View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14216_low_8 (Length: 491)
Name: NF14216_low_8
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Complemental strand, 42039038 - 42038576
Alignment:
| Q |
16 |
caaaacacatacacggtgcacatggagagaagggtgaggtcggcgcagggagagggctgctgcctgcttgttcatattttgttatttttggggttgattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42039038 |
caaaacacatacacggtgcacatggagagaagggtgaggtcggcgcagggagagggctgctgcctgcttgttcatattttgttatttttggggttgattt |
42038939 |
T |
|
| Q |
116 |
tcttatttaannnnnnnnngttaaccctccgattcttagggggaagggacattagtaattcaaatgccgtggggtaattatagtcttgtcaagaattgtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42038938 |
tcttatttaatttttttt-gttaaccctccgattcttagggggaagggacattagtaattcaaatgccgtgtggtaattatagtcttgtcaagaattgtt |
42038840 |
T |
|
| Q |
216 |
ttacacttaaatcaaactcaaggttctccaaaatgaatcgtcttttggtggaactaattaaccacatgagcctaattcattggtttttggtgttgattgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42038839 |
ttacacttaaatcaaactcaaggttctccaaaatgaatcgtcttttggtggaactaattaaccacatgagcctaattcattggtttttggtgttgattgt |
42038740 |
T |
|
| Q |
316 |
tatacaatgtattatgtaatctacaaaggatccaccattaatcaatattataatagggtataccaaattaagagcaaaaacaatagtaaaggttgcactc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42038739 |
tatacaatgtattatgtaatctacaaaggatccaccattaatcaatattataataggttataccaaattaagagcaaaaacaatagtaaaggtcgcactc |
42038640 |
T |
|
| Q |
416 |
gggacaacctacttacgcttagaatgtttatttaagcttgtgaatactggttgtgttttctgtg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42038639 |
gggacaacctacttacgcttagaatgtttatttaagcttgtgaatactggttgtgttttctgtg |
42038576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University