View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14216_low_9 (Length: 443)

Name: NF14216_low_9
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14216_low_9
NF14216_low_9
[»] chr3 (1 HSPs)
chr3 (13-443)||(54884495-54884928)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 54884928 - 54884495
Alignment:
Q  13 caaagggggagtggagaaagaatgtaaaaaagggaaagggtgcaaaggctgccactgaagtatatatgaacaatgtatgttaatacagtagtattttact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54884928 caaagggggagtggagaaagaatgtaaaaaagggaaagggtgcaaaggccgccactgaagtatatatgaacaatgtatgttaatacagtagtattttact 54884829  T
Q  113 gcaaatcctctggttattcctttgctgagtataagagcagtaatatttttctcgactctc---atggagagaatttacactgaatttcttttttaaattt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||    
T  54884828 gcaaatcctctggttattcctttgctgagtataagagcagtaatatttttctcgactctcctcatggagggaatttacactgaatttcttttttaaattt 54884729  T
Q  210 ctattgtctagattttcaatcaaattataacacgtaaatgagtttaattttgatatacttcctatgtaaagtttttatttgtcgattaaccagaaccaaa 309  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54884728 ctattgtctagattttcaatcaaattataaaacttaaatgagtttaattttgatatacttcctatgtaaagtttttatttgtcgattaaccagaaccaaa 54884629  T
Q  310 cacacaaaacagggatcctctatctagtaacgtaaattttccttttagatctaagggtcctcaaggtgctgcaccgtgcaggtgcttttggagatctttt 409  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54884628 cacacaaaacagggatcctctatctagtaaggtaaattttctttttagatccaagggtcctcaaggtgctgcaccgtgcaggtgcttttggagatctttt 54884529  T
Q  410 tctactttcggctatgatgaaattcaaatatgtt 443  Q
    ||||||||||||||||||||||||||||||||||    
T  54884528 tctactttcggctatgatgaaattcaaatatgtt 54884495  T

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