View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_high_10 (Length: 325)
Name: NF14217_high_10
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 55574 - 55279
Alignment:
| Q |
12 |
aagcaaaggaatgagagggatgacgacgagaagcagaggctttgatggcctgagcagcaagggaattagtattgataattggaggagcgctatttggttc |
111 |
Q |
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| T |
55574 |
aagcaaaggaatgagagggatgacgacgagaagcagaggctttgatggcctgagcagcaagggaattagtattgataattggaggagcgctatttggttc |
55475 |
T |
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| Q |
112 |
attatcatctaacaattcatgtcgcccattaatattaatatcttccttgaaggtcgaactccttgatacaacctgctttctcctatatgccattatcaat |
211 |
Q |
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| T |
55474 |
attatcatctaacaattcatgtcgcccattaatattaatatcttccttgaaggtcgaactccttgatacaacctgctttctcctatatgccattatcaat |
55375 |
T |
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| Q |
212 |
caaccaccgtaaccccctattacaaaaacaaacaactctctctccattcaactaatttcttttttctcatcaacccaaataactaaacccagattt |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374 |
caaccaccgcaaccccctattacaaaaacaaacaactctctctccattcaactaatttcttttttctcatcaacccaaataactaaacccagattt |
55279 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 27702163 - 27702225
Alignment:
| Q |
14 |
gcaaaggaatgagagggatgacgacgagaagcagaggctttgatggcctgagcagcaagggaa |
76 |
Q |
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||||||||| ||| ||| |||||||||| || ||||||||||||||| ||||| || |||||| |
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| T |
27702163 |
gcaaaggaaagagcgggttgacgacgagcagtagaggctttgatggcttgagcggcgagggaa |
27702225 |
T |
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