View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_high_7 (Length: 412)
Name: NF14217_high_7
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 54617098 - 54616706
Alignment:
| Q |
1 |
aaaggtaaagtcaataatgtcaatatcatattttatgcttcttcatgnnnnnnntgagggatcccatttttcttccactttttccagtcttaatattaag |
100 |
Q |
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| T |
54617098 |
aaaggtaaagtcaataatgtcaatatcat--tttatgcttcttcatgaaaaaaatgagggatcccatttttcttccactttttccagtcttaatattaag |
54617001 |
T |
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| Q |
101 |
aaaagtaatgaaaatgttaaaacagtatttgctttgccaccaaaacatacttttcgacataagtccaaattaaagatttggaagttttgtttattccagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54617000 |
aaaagtaatgaaaatgttaaaacagtatttgctttgccaccaaaacatacttttcgacataagtccaaattaaagatttggaagttttgtttattccagt |
54616901 |
T |
|
| Q |
201 |
catgcagatttgtttgtgtttaaacagagttaatcaactctaaaacattatcaatgtctaactaaactctaattccatggttcaaatttctagatgacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54616900 |
catgcagatttgtttgtgtttaaacagagttaatcaactctaaaacattatcaatgtctaactaaactctaattccatggttcaaatttctagatgaaat |
54616801 |
T |
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| Q |
301 |
tttagctaattattgggattattttgttatgttttggaaaaacagtatctgaacgaggctagttggaattggcgattgatgaagacaatcatgac |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54616800 |
tttagctaattattgggattattttgttatgttttggaaaaacagtatctgaacgaggctagttggaattggcgattgatgaagacaatcatgac |
54616706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 25077293 - 25077236
Alignment:
| Q |
341 |
aacagtatctgaacgaggctagttggaattggcgattgatgaagacaatcatgactga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25077293 |
aacagtatctgaacgaggctagttggaattggcgattgatgaagacaatcatgactga |
25077236 |
T |
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