View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14217_low_15 (Length: 221)

Name: NF14217_low_15
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14217_low_15
NF14217_low_15
[»] chr1 (18 HSPs)
chr1 (10-221)||(3924436-3924647)
chr1 (95-221)||(33527194-33527320)
chr1 (97-220)||(10199456-10199579)
chr1 (126-218)||(35017502-35017596)
chr1 (149-207)||(15360845-15360903)
chr1 (145-221)||(37842402-37842478)
chr1 (95-169)||(172676-172750)
chr1 (139-197)||(4699683-4699741)
chr1 (145-219)||(6074421-6074495)
chr1 (143-189)||(15437908-15437954)
chr1 (151-221)||(25006081-25006151)
chr1 (95-137)||(35058903-35058945)
chr1 (145-195)||(36151578-36151628)
chr1 (110-210)||(42757223-42757324)
chr1 (149-219)||(49517021-49517091)
chr1 (183-221)||(49888752-49888790)
chr1 (95-172)||(34619474-34619551)
chr1 (145-221)||(7472259-7472334)
[»] chr7 (17 HSPs)
chr7 (95-221)||(12110257-12110383)
chr7 (145-210)||(3610798-3610863)
chr7 (95-172)||(41668206-41668283)
chr7 (95-172)||(41668884-41668961)
chr7 (101-209)||(44917595-44917703)
chr7 (148-219)||(2727409-2727480)
chr7 (95-168)||(6824816-6824888)
chr7 (147-218)||(9527140-9527211)
chr7 (145-219)||(5006558-5006632)
chr7 (139-221)||(46945850-46945932)
chr7 (145-210)||(45813238-45813303)
chr7 (145-221)||(27481341-27481417)
chr7 (145-221)||(39169462-39169538)
chr7 (148-215)||(30496654-30496721)
chr7 (145-212)||(33894570-33894636)
chr7 (155-210)||(45777229-45777284)
chr7 (145-195)||(35536054-35536104)
[»] chr8 (15 HSPs)
chr8 (107-218)||(926396-926508)
chr8 (95-183)||(34522141-34522229)
chr8 (147-221)||(27728068-27728142)
chr8 (145-221)||(29973028-29973104)
chr8 (150-210)||(3269646-3269706)
chr8 (145-221)||(34080313-34080389)
chr8 (145-196)||(26215443-26215494)
chr8 (145-192)||(27465320-27465367)
chr8 (145-220)||(33209268-33209343)
chr8 (151-221)||(33714283-33714352)
chr8 (110-171)||(16163375-16163436)
chr8 (149-221)||(8799356-8799428)
chr8 (147-195)||(10079136-10079184)
chr8 (148-200)||(42215374-42215426)
chr8 (145-217)||(42597348-42597420)
[»] chr6 (18 HSPs)
chr6 (97-193)||(33080657-33080753)
chr6 (145-218)||(31624205-31624278)
chr6 (145-221)||(1402943-1403019)
chr6 (146-220)||(31776323-31776396)
chr6 (135-221)||(33887767-33887853)
chr6 (139-220)||(415245-415326)
chr6 (145-218)||(9093606-9093679)
chr6 (149-221)||(4006665-4006737)
chr6 (149-205)||(24836262-24836318)
chr6 (145-221)||(33826782-33826858)
chr6 (169-216)||(10272878-10272925)
chr6 (147-221)||(2117352-2117426)
chr6 (145-195)||(24782006-24782056)
chr6 (163-220)||(3785748-3785805)
chr6 (147-188)||(34633206-34633247)
chr6 (145-217)||(2735016-2735088)
chr6 (145-209)||(10452419-10452483)
chr6 (145-221)||(20671912-20671988)
[»] chr2 (31 HSPs)
chr2 (146-221)||(41407023-41407098)
chr2 (139-221)||(4090290-4090372)
chr2 (146-219)||(43299451-43299525)
chr2 (99-196)||(41817069-41817166)
chr2 (149-221)||(10143123-10143195)
chr2 (145-221)||(17952748-17952824)
chr2 (145-216)||(23143030-23143101)
chr2 (145-216)||(23554820-23554891)
chr2 (147-221)||(34054948-34055022)
chr2 (147-188)||(26857190-26857231)
chr2 (145-221)||(656824-656900)
chr2 (144-208)||(31740019-31740083)
chr2 (143-195)||(33192138-33192190)
chr2 (145-197)||(43259781-43259833)
chr2 (145-200)||(787278-787333)
chr2 (145-212)||(25609743-25609810)
chr2 (95-210)||(35486421-35486536)
chr2 (139-221)||(39621894-39621974)
chr2 (149-200)||(40808268-40808319)
chr2 (149-220)||(44439408-44439479)
chr2 (163-221)||(5043607-5043665)
chr2 (148-221)||(13866839-13866912)
chr2 (148-221)||(37053544-37053617)
chr2 (145-210)||(42907306-42907371)
chr2 (129-194)||(43530185-43530250)
chr2 (103-221)||(6887309-6887426)
chr2 (145-201)||(14209224-14209280)
chr2 (145-189)||(32098387-32098431)
chr2 (140-220)||(33931618-33931698)
chr2 (145-181)||(38239638-38239674)
chr2 (169-221)||(42419968-42420020)
[»] chr3 (21 HSPs)
chr3 (145-221)||(40122800-40122875)
chr3 (139-209)||(36101509-36101579)
chr3 (144-220)||(36783382-36783458)
chr3 (134-221)||(47904110-47904197)
chr3 (145-200)||(49586984-49587039)
chr3 (151-216)||(2318596-2318662)
chr3 (139-221)||(24785146-24785228)
chr3 (148-198)||(34954033-34954083)
chr3 (139-209)||(36139819-36139889)
chr3 (155-220)||(37788817-37788882)
chr3 (145-218)||(43116478-43116551)
chr3 (145-221)||(24887330-24887406)
chr3 (145-221)||(38462228-38462304)
chr3 (125-172)||(139912-139959)
chr3 (166-221)||(19679375-19679430)
chr3 (129-188)||(34958259-34958318)
chr3 (163-220)||(1816548-1816605)
chr3 (145-218)||(42084301-42084374)
chr3 (110-171)||(44014192-44014253)
chr3 (145-221)||(30956673-30956749)
chr3 (145-221)||(30972485-30972561)
[»] chr5 (18 HSPs)
chr5 (146-221)||(14295454-14295529)
chr5 (145-221)||(17368623-17368699)
chr5 (149-200)||(29116998-29117049)
chr5 (123-218)||(14599353-14599450)
chr5 (139-200)||(42569048-42569109)
chr5 (139-221)||(912695-912778)
chr5 (148-195)||(28586839-28586886)
chr5 (145-216)||(36539693-36539764)
chr5 (110-221)||(9106737-9106844)
chr5 (95-169)||(10125818-10125892)
chr5 (163-217)||(10272482-10272536)
chr5 (143-216)||(37526251-37526324)
chr5 (143-216)||(37588412-37588485)
chr5 (185-221)||(5946726-5946762)
chr5 (145-189)||(28578839-28578883)
chr5 (149-205)||(35135725-35135781)
chr5 (143-215)||(37690690-37690762)
chr5 (145-221)||(38831504-38831579)
[»] chr4 (15 HSPs)
chr4 (112-220)||(53422276-53422380)
chr4 (145-220)||(17884015-17884090)
chr4 (145-200)||(21952522-21952577)
chr4 (95-220)||(6466094-6466219)
chr4 (148-220)||(4071832-4071904)
chr4 (148-215)||(24929443-24929510)
chr4 (145-188)||(52645829-52645872)
chr4 (161-219)||(13949893-13949951)
chr4 (145-215)||(50745947-50746017)
chr4 (139-184)||(38478683-38478728)
chr4 (148-221)||(54325084-54325157)
chr4 (150-219)||(55870390-55870459)
chr4 (148-204)||(20936066-20936122)
chr4 (145-189)||(47970265-47970309)
chr4 (149-221)||(49219090-49219162)
[»] scaffold0024 (1 HSPs)
scaffold0024 (149-221)||(27527-27599)
[»] scaffold0053 (1 HSPs)
scaffold0053 (148-216)||(20129-20197)
[»] scaffold0022 (1 HSPs)
scaffold0022 (146-221)||(143109-143183)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 3924436 - 3924647
Alignment:
Q  10 ataattctcagcatgtattaagaacagttagggaccatcagagagactttaagatggcaaggaatacatgtaacaccagtgctgggtttggataaacagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3924436 ataattctcagcatgtattaagaacagttagggaccatcagagagactttaagatggcaaggaatacatgtaacaccagtgctgggtttggataaacagt 3924535  T
Q  110 ttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3924536 ttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 3924635  T
Q  210 ttataagctatc 221  Q
    ||||||||||||    
T  3924636 ttataagctatc 3924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 33527320 - 33527194
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtata 194  Q
    |||||||||||||| |||||||||| | || ||||||| | || ||||| |||||||||||| |||| ||||||||||  || |||||||||||| ||||    
T  33527320 gtttggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatata 33527221  T
Q  195 atctattagttgtttttataagctatc 221  Q
    |||||| || |||||| ||||| ||||    
T  33527220 atctataagctgttttcataagttatc 33527194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 10199579 - 10199456
Alignment:
Q  97 ttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataat 196  Q
    |||| ||||||  |||||||||| | ||||||||||||||| ||  | ||| |||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  10199579 ttgggtaaacaacttattttgcagcttatagcataaacacttatagataagttatttctataacccaagataaaataaagtcaaactattttcgtataat 10199480  T
Q  197 ctattagttgtttttataagctat 220  Q
    | || || | |||| |||||||||    
T  10199479 cgataagcttttttcataagctat 10199456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 35017502 - 35017596
Alignment:
Q  126 agcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaa--actgttttcgtataatctattagttgtttttataagct 218  Q
    |||||||  ||| ||||| ||||||||| ||||| |||||||||||| ||| |||  ||||||||||||||||||||  | |||||| |||||||    
T  35017502 agcataagaacttatgaataagctatttttataatacaagataaaataaagtcaaacactgttttcgtataatctatatgctgttttcataagct 35017596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 15360845 - 15360903
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgt 207  Q
    ||||||||||||| |||||||||| ||| |||||||||||| ||||| |||| ||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 37842478 - 37842402
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||| || ||||| |||| |||  ||||||| |||| |||| |||| ||||||||| ||||||||||    
T  37842478 aagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataagttgttttcataagctatc 37842402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 172750 - 172676
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataa 169  Q
    |||||||||||||| |||  || |||| |||| ||||||| || ||| | ||||||||||||||||| |||||||    
T  172750 gtttggataaacagcttaaattccaacttataacataaactcttatgtataagctatttctataacaaaagataa 172676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 4699741 - 4699683
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatc 197  Q
    ||||| |||||||||||| |||||||||| |||| ||| |||||| |||| ||||||||    
T  4699741 atgaataagctatttctacaacacaagattaaataaagtcaaactatttttgtataatc 4699683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 6074421 - 6074495
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    ||||||||||||||||| ||||| | || |||  ||||||||||| ||||| |||| |||||||||  |||||||    
T  6074421 aagctatttctataacaaaagatgatataaagttaaactgttttcatataagctatgagttgttttcttaagcta 6074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 15437908 - 15437954
Alignment:
Q  143 aaaagctatttctataacacaagataaaatcaaggcaaactgttttc 189  Q
    ||||||||||||||||||| || ||||||| ||| ||||||||||||    
T  15437908 aaaagctatttctataacaaaaaataaaattaagtcaaactgttttc 15437954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 25006151 - 25006081
Alignment:
Q  151 tttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| | | |||||| ||| |||| ||||||| ||||| |||| ||||||||| ||||||||||    
T  25006151 tttctataacagacggtaaaataaagtcaaattgttttcatataagctataagttgttttcataagctatc 25006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 35058945 - 35058903
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacact 137  Q
    |||||||||||||| |||||||||||| |||||||||| ||||    
T  35058945 gtttggataaacagcttattttgcaacttatagcataagcact 35058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 36151628 - 36151578
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    |||||||||| |||||| |||||||||| ||| |||| |||||||||||||    
T  36151628 aagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataa 36151578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 42757324 - 42757223
Alignment:
Q  110 ttattttgcaacatatagcataaa-cactaatgaaa-aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgt 207  Q
    |||||||||| ||||||||||||| |||| || | | || ||||||| ||||||||||||||||||||  | || | |||||||||||||||| || |||    
T  42757324 ttattttgcagcatatagcataaaacacttatcatataatctatttccataacacaagataaaatcaaatc-aatttttttcgtataatctataagctgt 42757226  T
Q  208 ttt 210  Q
    |||    
T  42757225 ttt 42757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 49517021 - 49517091
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| | ||| |||| || |||||| ||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 49888752 - 49888790
Alignment:
Q  183 tgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  49888752 tgttttcgtataagctattagttgttttcataagctatc 49888790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 34619551 - 34619474
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaat 172  Q
    |||||||||||||| ||| |||||| | ||||||||||   || ||| | |||| |||||||||||| ||||||||||    
T  34619551 gtttggataaacagcttaatttgcagcttatagcataattgcttatgtataagccatttctataacaaaagataaaat 34619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 7472259 - 7472334
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||| |||||| ||| |||  ||| |||||| ||||||||||| || |||||  ||||||||||    
T  7472259 aagctatttctataacaaaagatataat-aagttaaattgtttttgtataatctataagctgtttccataagctatc 7472334  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 12110257 - 12110383
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtata 194  Q
    |||| ||||||||| ||| |||||||| |||||||||| |||| ||||| || |||||||||| |||||||||||||| ||| |||| |||||| |||||    
T  12110257 gtttcgataaacagcttaatttgcaacttatagcataagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgttttggtata 12110356  T
Q  195 atctattagttgtttttataagctatc 221  Q
    | |||| || |||||| ||||||||||    
T  12110357 agctataagctgttttcataagctatc 12110383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 3610863 - 3610798
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttt 210  Q
    |||||||||||| |||| |||||||||| ||||||||||||||| |||||| |||| |||||||||    
T  3610863 aagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctataagttgtttt 3610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 41668283 - 41668206
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaat 172  Q
    |||||||||||||| |||||||||| |  ||||||||| | || ||||| |||||||||||||||| |||||||||||    
T  41668283 gtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataaaat 41668206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 41668961 - 41668884
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaat 172  Q
    |||||||||||||| |||||||||| |  ||||||||| | || ||||| |||||||||||||||| |||||||||||    
T  41668961 gtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataaaat 41668884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 44917703 - 44917595
Alignment:
Q  101 ataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||||||||||||| | || ||||||| | || || || ||| | ||||||||||||| ||||||   ||| ||||||||||| |||||||||||    
T  44917703 ataaacagtttattttgcagcttaaagcataagcgcttataaataagttgtttctataacacaggataaagcaaagtcaaactgtttttgtataatctat 44917604  T
Q  201 tagttgttt 209  Q
     ||||||||    
T  44917603 aagttgttt 44917595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 2727480 - 2727409
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    |||||||||||||| |||||||||| |||||||||| ||||| ||| | |||| | ||||||||||||||||    
T  2727480 ctatttctataacaaaagataaaataaaggcaaactcttttcatatcaactataaattgtttttataagcta 2727409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 6824816 - 6824888
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagata 168  Q
    |||||||||||||||||| |||||| | |||||||||||| || ||| | ||||||||||||||||| ||||||    
T  6824816 gtttggataaacagtttaatttgcaccttatagcataaacgct-atgtataagctatttctataacaaaagata 6824888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 9527211 - 9527140
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    ||||| ||||||||| |||||| ||| ||| |||||||||||| ||||| |||| ||||||||| |||||||    
T  9527211 gctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 5006632 - 5006558
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    |||||||| |||||||| |||||||||| ||| |||||||||||| |||||  ||| | ||||||| ||||||||    
T  5006632 aagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataagcta 5006558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 46945850 - 46945932
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||| ||||||||| |||||||||||||||||||||  |||| ||||   ||||||||||| | |||||||  |||||||||    
T  46945850 atgaataagctatttgtataacacaagataaaatcaaatcaaattgttcatgtataatctataatttgttttcttaagctatc 46945932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 45813303 - 45813238
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttt 210  Q
    |||||||||||||| || |||||||||| ||| |||  ||||||| |||||||||| |||||||||    
T  45813303 aagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgtttt 45813238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 27481417 - 27481341
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||| | |||||||  ||| |||||||||| | ||||| |||| |||| |||| ||||||||||    
T  27481417 aagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagctataagttattttcataagctatc 27481341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 39169538 - 39169462
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| || |||||||| ||||| ||| || |||||||| ||||||||||| |  |||||| ||||||||||    
T  39169538 aagctatttccattacacaagaaaaaatgaagtcagactgtttttgtataatctataaactgttttcataagctatc 39169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 30496654 - 30496721
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataa 215  Q
    |||||||||||||| || ||||||| ||| |||| ||||||||||||| ||||  |||||||| ||||    
T  30496654 ctatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcataa 30496721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 33894570 - 33894636
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttttta 212  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||| ||||| || |  ||||||||||    
T  33894570 aagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagctttatgttgttttta 33894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 45777284 - 45777229
Alignment:
Q  155 tataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttt 210  Q
    ||||||| |||||||||| ||| |||||||||||| ||||| |||| |||||||||    
T  45777284 tataacaaaagataaaattaagtcaaactgttttcatataaactataagttgtttt 45777229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 35536054 - 35536104
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    ||||||||||||||||| |||||||||| ||| |||| ||||||| |||||    
T  35536054 aagctatttctataacataagataaaataaagtcaaattgttttcatataa 35536104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 926396 - 926508
Alignment:
Q  107 agtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggc-aaactgttttcgtataatctattagtt 205  Q
    ||||||||||||| |  ||||||||| | |  ||||| |||||||||||||||||||||||||||| ||| | |||||||||| |||| |||||| ||||    
T  926396 agtttattttgcagctaatagcataagcgcatatgaataagctatttctataacacaagataaaataaagtcaaaactgtttttgtattatctataagtt 926495  T
Q  206 gtttttataagct 218  Q
    ||||| |||||||    
T  926496 gttttcataagct 926508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 34522229 - 34522141
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaact 183  Q
    ||||||||||| |  |||||||||||| || ||||||| | || ||||| ||||||||||||| |||||||||||||| ||| ||||||    
T  34522229 gtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaataaagtcaaact 34522141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 27728142 - 27728068
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| | |||||||||| ||| |||||| ||||| |||||  ||||||||||||| ||||||||||    
T  27728142 gctatttctataaaaaaagataaaataaagtcaaactattttcatataaagtattagttgttttcataagctatc 27728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 29973028 - 29973104
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| ||||||||| |||||| ||| |||||| |||||  |||| |||| ||||||||| ||||||||||    
T  29973028 aagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatc 29973104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 3269646 - 3269706
Alignment:
Q  150 atttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttt 210  Q
    ||||||||||||||||||||||| ||| | || || ||| ||||||||||| |||||||||    
T  3269646 atttctataacacaagataaaataaagtcgaattgattttgtataatctataagttgtttt 3269706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 34080389 - 34080313
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| ||||| |||||||||| ||| |||||||||  ||||||| |||| || |||||| ||| ||||||    
T  34080389 aagctatttctttaacaaaagataaaatgaagtcaaactgttaccgtataagctataagctgttttcatacgctatc 34080313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 26215443 - 26215494
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataat 196  Q
    ||||||||||||||||| |||||||||| |||  ||||| ||||||||||||    
T  26215443 aagctatttctataacaaaagataaaataaagttaaactattttcgtataat 26215494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 27465320 - 27465367
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgta 192  Q
    |||||||||||||| || |||||||||||||  |||||||||||||||    
T  27465320 aagctatttctatagcaaaagataaaatcaaatcaaactgttttcgta 27465367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 33209343 - 33209268
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||||||||||||||   |||||||||| ||| | |||||||||| ||||| |||| || | ||||||||||||||    
T  33209343 aagctatttctataatgaaagataaaataaagtcgaactgttttcatataaactataagctatttttataagctat 33209268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 33714352 - 33714283
Alignment:
Q  151 tttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||||||||||| ||| |||||| |||| ||| ||||||| || | |||| ||||||||||    
T  33714352 tttctataacacaagataaaataaagtcaaactatttt-gtacaatctataagctattttcataagctatc 33714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 16163436 - 16163375
Alignment:
Q  110 ttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaa 171  Q
    |||||||||| | |||||||||| |||| ||| | ||||||||||||||||  |||||||||    
T  16163436 ttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataaaa 16163375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 8799356 - 8799428
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| |||||||||| ||| |||||| ||| |  ||||  ||| || |||||||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaactatttccagataaattataaggtgtttttataagctatc 8799428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 10079184 - 10079136
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    ||||||||||| | | |||||||||| ||| ||||||||||||||||||    
T  10079184 gctatttctatgataaaagataaaatgaagtcaaactgttttcgtataa 10079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 42215426 - 42215374
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||| ||||  ||||||||| ||| ||||||||||| |||||||||||    
T  42215426 ctatttctacaacatgagataaaataaagtcaaactgtttttgtataatctat 42215374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 42597348 - 42597420
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagc 217  Q
    ||||||||||||||||| |||||||||| |||  ||| ||||||| |  || |||| ||||||||| ||||||    
T  42597348 aagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataagc 42597420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 33080753 - 33080657
Alignment:
Q  97 ttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtat 193  Q
    ||||||||| ||||||||||||| | |||||||||| |||| ||||| ||||| ||||||||||||| |||||| ||||| |||| |||||| ||||    
T  33080753 ttggataaatagtttattttgcagcttatagcataagcacttatgaataagctttttctataacacaggataaattcaagtcaaattgtttttgtat 33080657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 31624205 - 31624278
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    ||||||||||||||||| |||||||||| |    ||| ||||||||||||||||||||| |||||| |||||||    
T  31624205 aagctatttctataacaaaagataaaataagtttaaattgttttcgtataatctattagctgttttaataagct 31624278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 1402943 - 1403019
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||| |||||||||| |||  ||||| ||||| ||||| |||| | ||||||| ||||||||||    
T  1402943 aagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatc 1403019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 31776396 - 31776323
Alignment:
Q  146 agctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    ||||||||||||||||||| ||||||| ||| |||| |||||| |||||||  || ||||||||| |||||||||    
T  31776396 agctatttctataacacaa-ataaaataaagtcaaattgtttttgtataattaataagttgttttcataagctat 31776323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 33887767 - 33887853
Alignment:
Q  135 actaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||| ||| ||||| |||||||||||||||||  ||  ||||||||||| |||||||| || |  |||||| ||||||||||    
T  33887767 actaatgaataagatatttttataacacaagataaaacaaactcaaactgttttagtataatcaataaactgttttcataagctatc 33887853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 415245 - 415326
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    ||||| ||| ||||||||| || | ||||||||  |||  ||| ||||||||||||| |||| |||||||||||||||||||    
T  415245 atgaataagttatttctattacgcgagataaaacaaagttaaattgttttcgtataagctataagttgtttttataagctat 415326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 9093679 - 9093606
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    |||||||||||||| || |||||||||| |||  ||| ||||||||||||| |||| || |||||| |||||||    
T  9093679 aagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagct 9093606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 4006665 - 4006737
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| | |||||||| ||| |||| ||||||  ||||| |||| ||||||||| ||||||||||    
T  4006665 tatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 24836318 - 24836262
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagtt 205  Q
    ||||||||||||| |||||||||| ||| |||| ||||||||||||| |||| ||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaattgttttcgtataaactataagtt 24836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 33826858 - 33826782
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||| ||||||| ||||| |||| ||| ||||||||||| ||||||| ||| ||  ||||||||||| ||||    
T  33826858 aagctatttatataacagaagattaaataaagtcaaactgtttttgtataatatataagcagtttttataagttatc 33826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 10272925 - 10272878
Alignment:
Q  169 aaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    |||| ||| |||||||||||||||| ||||||||||||||| ||||||    
T  10272925 aaataaagtcaaactgttttcgtattatctattagttgtttctataag 10272878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 2117352 - 2117426
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| ||| | |||||||  ||| |||||| ||||| |||||||||| ||||||||| ||||| ||||    
T  2117352 gctatttctatgacaaaggataaaacaaagtcaaactattttcatataatctataagttgttttcataagttatc 2117426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 24782006 - 24782056
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    ||||||||||||||||| |||||||||||||  |||| ||||||| |||||    
T  24782006 aagctatttctataacaaaagataaaatcaaatcaaattgttttcatataa 24782056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 3785805 - 3785748
Alignment:
Q  163 aagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||||||||| |||  ||||||||||||||||| |||| || ||||||| ||||||||    
T  3785805 aagataaaataaagttaaactgttttcgtataagctataagctgtttttgtaagctat 3785748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 34633247 - 34633206
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgtttt 188  Q
    ||||||||||||| |||||||||||| ||| |||||||||||    
T  34633247 gctatttctataaaacaagataaaatgaagtcaaactgtttt 34633206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 2735016 - 2735088
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagc 217  Q
    ||||||| ||||||||| |||||||||| |||  ||| | |||| ||||||||||| || |||||| ||||||    
T  2735016 aagctatgtctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcataagc 2735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 10452483 - 10452419
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 209  Q
    ||||||||||||||||| || ||||||| ||  |||||| ||||| ||||| |||| ||||||||    
T  10452483 aagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgttt 10452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 20671988 - 20671912
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||| | || |||||||||| ||| |||| ||||||||||||| || | | ||||||| |||| |||||    
T  20671988 aagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagctttaaattgttttcataaactatc 20671912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 41407023 - 41407098
Alignment:
Q  146 agctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||||||||||||| |||  |||||| ||| ||||| ||||| ||||||||| ||||||||||    
T  41407023 agctatttctataacacaagataaaataaagttaaactgcttttgtatattctataagttgttttcataagctatc 41407098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 4090290 - 4090372
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||| |||||||||| ||||||||||||||||| ||| |||| |||||  ||||||||||| ||||||||  ||||||||||    
T  4090290 atgaataagctatttccataacacaagataaaataaagtcaaattgtttcggtataatctataagttgtttacataagctatc 4090372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 43299525 - 43299451
Alignment:
Q  146 agctatttctataacacaagataaaatcaaggcaaactgttttcgtat-aatctattagttgtttttataagcta 219  Q
    |||||||| ||||||| |||||||||| ||| ||||||||||| |||| ||||||| ||||||||| ||||||||    
T  43299525 agctatttatataacagaagataaaataaagtcaaactgtttttgtataaatctataagttgttttcataagcta 43299451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 41817069 - 41817166
Alignment:
Q  99 ggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataat 196  Q
    |||||||||  ||||||||| || |||| ||||||  || ||||| |||||||||||||||||||||| ||| | || ||||||| |||| |||||||    
T  41817069 ggataaacaacttattttgccacttataacataaatgcttatgaataagctatttctataacacaagagaaattaaaagcaaactatttttgtataat 41817166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 10143123 - 10143195
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| |||||||||| ||| |||||||||||  ||||| |||| |||| |||| ||||||||||    
T  10143123 tatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctatc 10143195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 17952824 - 17952748
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||| |||||||||| ||| |||||| ||||| ||||| |||  || |||||| ||||||||||    
T  17952824 aagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctatc 17952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 23143101 - 23143030
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||||||| | ||||| |||||||||||||  |||| ||||||| ||||| |||||||||||||| |||||    
T  23143101 aagctatttttgtaacaaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcataag 23143030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 23554891 - 23554820
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||||||| | ||||| |||||||||||||  |||| ||||||| ||||| |||||||||||||| |||||    
T  23554891 aagctatttttgtaacaaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcataag 23554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 34055022 - 34054948
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||| |||||||||| |||||||||||||| | ||||   ||| || |||||| ||||||||||    
T  34055022 gctatttctataacaaaagataaaataaaggcaaactgtttacatatatgatataaggtgttttcataagctatc 34054948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 26857231 - 26857190
Alignment:
Q  147 gctatttctataacacaagataaaatcaaggcaaactgtttt 188  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  26857231 gctatttctataacacaagataaaatgaagtcaaactgtttt 26857190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 656900 - 656824
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||| ||||||||||  |  |||| ||||||||||||| || | ||||| ||| ||||||||||    
T  656900 aagctatttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcataagctatc 656824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 31740083 - 31740019
Alignment:
Q  144 aaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtt 208  Q
    |||||||||||||||||  |||||||||| ||| |||||| ||||| ||||| |||| |||||||    
T  31740083 aaagctatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgtt 31740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 33192138 - 33192190
Alignment:
Q  143 aaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    |||| |||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  33192138 aaaaactatttctataacataagataaaataaagtcaaactgttttcatataa 33192190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 43259781 - 43259833
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatc 197  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||| ||||||||    
T  43259781 aagctatttctataacacaagataaaataaagtcaaatagtttttgtataatc 43259833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 787278 - 787333
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    |||||||||||||||||||||||||||| ||| |||  |||||| ||| |||||||    
T  787278 aagctatttctataacacaagataaaataaagtcaacttgtttttgtaaaatctat 787333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 25609743 - 25609810
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttttta 212  Q
    ||||||||||||||| | |||||||||| ||| |||  | ||||||||||| |||| |||||||||||    
T  25609743 aagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgttttta 25609810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 35486536 - 35486421
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtata 194  Q
    |||||||||||||| |||||||| | | ||||| | || |  | ||||  |||||||||||||| || ||| |||| | ||| ||||||||||| |||||    
T  35486536 gtttggataaacagcttattttgtagcttatagtagaagcgtttatgagtaagctatttctatagcagaaggtaaagtaaagtcaaactgtttttgtata 35486437  T
Q  195 atctattagttgtttt 210  Q
    |||||| || ||||||    
T  35486436 atctataagctgtttt 35486421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 39621894 - 39621974
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||| ||| |||||||||||||||| ||||||| ||| |||||  |||| ||||||||||| || |||||| ||||| ||||    
T  39621894 atgaataagatatttctataacacaaaataaaataaagtcaaac--tttttgtataatctataagctgttttcataagttatc 39621974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 40808319 - 40808268
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||| |||||||||||||| ||| |||| |||||| |||||||||||    
T  40808319 tatttctattacacaagataaaataaagtcaaattgtttttgtataatctat 40808268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 44439479 - 44439408
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||||| |||||| || ||||||| |||  |||||||||| |||||| |||| | |||||||||||||||||    
T  44439479 tatttccataacaaaatataaaataaagttaaactgtttttgtataagctataaattgtttttataagctat 44439408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 5043665 - 5043607
Alignment:
Q  163 aagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| ||| |||||||||||| ||||| |||  ||||||||| ||||||||||    
T  5043665 aagataaaataaagtcaaactgttttcatataagctagaagttgttttcataagctatc 5043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 13866839 - 13866912
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| || |||||||||| ||| |||||||||||  |||||||||| || | |||| || |||||||    
T  13866839 ctatttctatagcaaaagataaaattaagtcaaactgtttttatataatctataagctcttttcattagctatc 13866912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 37053544 - 37053617
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||| || ||||||| ||| |||||||||||| |||||  ||| |||| |||| || |||||||    
T  37053544 ctatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcattagctatc 37053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 42907306 - 42907371
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttt 210  Q
    ||||||||||||||||| |||| ||||| |||  ||| ||||||||| ||| |||| |||||||||    
T  42907306 aagctatttctataacagaagaaaaaataaagttaaattgttttcgtttaagctataagttgtttt 42907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 43530250 - 43530185
Alignment:
Q  129 ataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtata 194  Q
    |||| |||| ||||| ||||||||||||||  |||||||||||| ||| ||||||| || ||||||    
T  43530250 ataagcacttatgaataagctatttctataggacaagataaaataaagtcaaactgcttccgtata 43530185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 6887426 - 6887309
Alignment:
Q  103 aaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataa-tctatt 201  Q
    ||||||||||||||||| | ||||  |||| | || ||||| ||||||||||  ||||||||||||| || ||| ||||| | ||| ||||||  ||||     
T  6887426 aaacagtttattttgcagcttatataataagcgcttatgaataagctatttc--taacacaagataagataaagtcaaacggcttttgtataaccctata 6887329  T
Q  202 agttgtttttataagctatc 221  Q
    ||||||||| ||||| ||||    
T  6887328 agttgttttcataagttatc 6887309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 14209224 - 14209280
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctatt 201  Q
    |||||||||| |||||| |||||||||| ||  |||||||||||| ||||| |||||    
T  14209224 aagctatttcaataacaaaagataaaataaattcaaactgttttcatataagctatt 14209280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 32098431 - 32098387
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttc 189  Q
    ||||||||||||||||| |||||||||| ||| |||| |||||||    
T  32098431 aagctatttctataacaaaagataaaataaagtcaaagtgttttc 32098387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 33931698 - 33931618
Alignment:
Q  140 tgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||| ||||||||||||| |||| ||||||||| | | || | |||||| |||||| |||| || |||||| |||||||||    
T  33931698 tgaataagctatttctattacactagataaaataaggtcagattgtttttgtataagctataagctgttttcataagctat 33931618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 38239674 - 38239638
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaa 181  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  38239674 aagctatttctataacaaaagataaaatcaagtcaaa 38239638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 42419968 - 42420020
Alignment:
Q  169 aaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| ||||||||| ||||||||||| || | |||| ||||||||||    
T  42419968 aaatcaaggcgaactgtttttgtataatctataagctattttcataagctatc 42420020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 40122875 - 40122800
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| |||||| |||||||||| ||| |||||||||||| || || |||| ||||||||||||||||||||    
T  40122875 aagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctataagttgtttttataagctatc 40122800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 36101509 - 36101579
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 209  Q
    ||||| ||||||||||| ||| | |||||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  36101509 atgaataagctatttctgtaatataagataaaataaagtcaaactgatttcgtataatctataagttgttt 36101579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 36783458 - 36783382
Alignment:
Q  144 aaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    ||||||||||||||| || |||||||||| |||  ||| ||||||| ||||| ||||||| |||||| |||||||||    
T  36783458 aaagctatttctataccaaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagctat 36783382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 47904197 - 47904110
Alignment:
Q  134 cactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||| ||||| |||||||||||||||| ||| ||||||| ||  ||| || ||||| |||||||||| ||| ||||| ||||||||||    
T  47904197 cacttatgaataagctatttctataacgcaacataaaatgaaatcaagctattttcatataatctataagtggttttcataagctatc 47904110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 49587039 - 49586984
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||| ||||| ||||    
T  49587039 aagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 2318596 - 2318662
Alignment:
Q  151 tttctataaca-caagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||||||||| ||||||||||||||  |||| ||||||| ||||| |||| |||||||||||||||    
T  2318596 tttctataacaacaagataaaatcaaatcaaattgttttcatataaactataagttgtttttataag 2318662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 24785146 - 24785228
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||| || ||||||||| | ||||||||||||| ||| ||| ||||||| ||||||||||| |  |||||| ||||||||||    
T  24785146 atgaataacctatttctaaatcacaagataaaataaagtcaatctgtttttgtataatctataacgtgttttcataagctatc 24785228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 34954033 - 34954083
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatct 198  Q
    ||||||||||||||||||||||||| ||| ||| |||||||| ||||||||    
T  34954033 ctatttctataacacaagataaaataaagtcaagctgttttcatataatct 34954083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 36139819 - 36139889
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 209  Q
    ||||| ||||||||||| ||| | |||||||||| ||| ||||||| |||||||||| |||| ||||||||    
T  36139819 atgaataagctatttctgtaatataagataaaataaagtcaaactgatttcgtataagctataagttgttt 36139889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 37788817 - 37788882
Alignment:
Q  155 tataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    ||||||| |||||||||| ||| | || | |||||||||||||||| ||||||||| |||||||||    
T  37788817 tataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcataagctat 37788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 43116551 - 43116478
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    ||||||||||||||||| |||||||||||||  |||||  ||||| ||||| |||| ||| ||||| |||||||    
T  43116551 aagctatttctataacaaaagataaaatcaaatcaaacaattttcatataagctataagtcgttttcataagct 43116478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 24887406 - 24887330
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||||||  ||||||||| ||| |||||||| ||| ||||| |||  || |||||| ||||||||||    
T  24887406 aagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatc 24887330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 38462228 - 38462304
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||| || |||||||||| ||| |||||||||||| ||||  |||| |  |||||| ||||||||||    
T  38462228 aagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatc 38462304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 139912 - 139959
Alignment:
Q  125 tagcataaacactaatgaaaaagctatttctataacacaagataaaat 172  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  139912 tagcataagcacttatgaataagctatttctattacacaagataaaat 139959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 19679430 - 19679375
Alignment:
Q  166 ataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||| ||| |||||||||||| ||||| |||| |||||||||||||| |||||    
T  19679430 ataaaataaagtcaaactgttttcttataagctataagttgtttttataaactatc 19679375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 34958259 - 34958318
Alignment:
Q  129 ataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgtttt 188  Q
    |||| |||| ||||| || ||||||||||||||||||||||||| ||| ||| |||||||    
T  34958259 ataagcacttatgaataaactatttctataacacaagataaaataaagtcaagctgtttt 34958318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 1816548 - 1816605
Alignment:
Q  163 aagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||||||||| ||| ||||||||||| ||||||  ||| ||||||||| |||||||||    
T  1816548 aagataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctat 1816605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 42084374 - 42084301
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    ||||||||||||||||| | |||||||| | | |||  ||||||  ||||| |||||||||||||| |||||||    
T  42084374 aagctatttctataacaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 42084301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 44014192 - 44014253
Alignment:
Q  110 ttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaa 171  Q
    |||||||||| | |||||||||| |||| ||| | ||||||||||||||||  |||||||||    
T  44014192 ttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataaaa 44014253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 30956749 - 30956673
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||| || |||||||||| |||  ||| |||||| |||||  |||| ||||||||| | ||||||||    
T  30956749 aagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatc 30956673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 30972561 - 30972485
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||| || |||||||||| |||  ||| |||||| |||||  |||| ||||||||| | ||||||||    
T  30972561 aagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatc 30972485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 14295454 - 14295529
Alignment:
Q  146 agctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||||||||| |||||||||| ||| |||||||||||| ||||| |||| || ||||||  |||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatc 14295529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 17368623 - 17368699
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| ||||||||  || |||| ||| ||||||||||| || |||||||| ||||||||| ||||||||||    
T  17368623 aagctatttcaataacacagtattaaatgaagtcaaactgtttttgtgtaatctataagttgttttcataagctatc 17368699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 29117049 - 29116998
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaactgttttcgtataagctat 29116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 14599450 - 14599353
Alignment:
Q  123 tatagcataaacactaatgaaaaagctatttctataacacaa--gataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagct 218  Q
    ||||||||||||||| |||   ||||||||||||||||| ||  |||||||| ||| |||||||||||| |||||  ||| ||||||||  |||||||    
T  14599450 tatagcataaacacttatgtttaagctatttctataacaaaactgataaaattaagtcaaactgttttcatataagttataagttgtttcgataagct 14599353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 42569109 - 42569048
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    |||||||||||||||||||| || |||||||||| ||| | || ||||||||||||| ||||    
T  42569109 atgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctat 42569048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 912778 - 912695
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggc-aaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||| ||| |||||||||||||||| ||||||| ||| | ||| ||||||| ||||| | || |||||||||||||| |||||    
T  912778 atgaataagttatttctataacacaatataaaataaagtcaaaattgttttcatataagcaataagttgtttttataaactatc 912695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 28586886 - 28586839
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataa 195  Q
    |||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaactgttttcatataa 28586839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 36539693 - 36539764
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||||||| | || || |||||||||| ||| ||| |||||||| ||||| |||| |||||||||||||||    
T  36539693 aagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagctataagttgtttttataag 36539764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 9106737 - 9106844
Alignment:
Q  110 ttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttt 209  Q
    |||||||||| | || ||||||| || | ||||| |||| ||||||||||| ||||||||    ||| ||||||||||| ||||||||||| || | |||    
T  9106737 ttattttgcagcttaaagcataagcatttatgaataagcaatttctataacccaagataa----aagtcaaactgtttttgtataatctataagctattt 9106832  T
Q  210 ttataagctatc 221  Q
    | ||||| ||||    
T  9106833 tcataagttatc 9106844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 10125892 - 10125818
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataa 169  Q
    |||||||||||||| |||| ||||||  ||||||||||    | ||||| |||||||||||||| ||||||||||    
T  10125892 gtttggataaacagcttatattgcaagttatagcataactgattatgaataagctatttctatatcacaagataa 10125818  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 10272536 - 10272482
Alignment:
Q  163 aagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagc 217  Q
    |||||||||| ||| |||| ||||||||||||| |||| ||||||||| ||||||    
T  10272536 aagataaaattaagtcaaattgttttcgtataagctataagttgttttcataagc 10272482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 37526324 - 37526251
Alignment:
Q  143 aaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||| ||||||||||| | |||||||||||||  ||||  |||||| ||||| |||| ||||||||| |||||    
T  37526324 aaaagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataag 37526251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 37588485 - 37588412
Alignment:
Q  143 aaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    ||||| ||||||||||| | |||||||||||||  ||||  |||||| ||||| |||| ||||||||| |||||    
T  37588485 aaaagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataag 37588412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 5946762 - 5946726
Alignment:
Q  185 ttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||| |||| |||||||||||||||||||||||||    
T  5946762 ttttcgaataagctattagttgtttttataagctatc 5946726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 28578839 - 28578883
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttc 189  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||||||    
T  28578839 aagctatttctataacataagataaaataaagtcaagctgttttc 28578883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 35135781 - 35135725
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagtt 205  Q
    ||||||||||||| |||||||||| ||| |||||| ||||| ||||| |||| ||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 37690762 - 37690690
Alignment:
Q  143 aaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataa 215  Q
    ||||| ||||||||||| | |||||||||||||  ||||  |||||| ||||| |||| ||||||||| ||||    
T  37690762 aaaagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37690690  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 38831579 - 38831504
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||| | | | |||||||||| ||| ||||||||||||||||||   || |||||||||| |||||||||    
T  38831579 aagctatttctgttataaaagataaaataaagtcaaactgttttcgtataaatgataagttgttttt-taagctatc 38831504  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 53422276 - 53422380
Alignment:
Q  112 attttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgttttt 211  Q
    |||||||| | |||||||||| | || ||||| |||||||||||| ||||||||||||||| ||  ||||| ||||| ||||||||    |||||||||     
T  53422276 attttgcagcttatagcataagctcttatgaataagctatttctacaacacaagataaaataaattcaaacagtttttgtataatc----agttgttttc 53422371  T
Q  212 ataagctat 220  Q
    |||||||||    
T  53422372 ataagctat 53422380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 17884015 - 17884090
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    ||||||||||||||||| |||||||||| |||  ||| |||||| ||||||  ||| ||||||||| |||||||||    
T  17884015 aagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagctat 17884090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 21952522 - 21952577
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctat 200  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| |||||||| ||||    
T  21952522 aagctatttctataacaaaaggtaaaatcaagtcaaactgttatcgtataagctat 21952577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 6466219 - 6466094
Alignment:
Q  95 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaatcaaggcaaactgttttcgtata 194  Q
    |||||||||||||  || ||||||| | |||||| ||| | || ||||| ||| | ||| ||||||||||||| |||| |||  ||| | |||| |||||    
T  6466219 gtttggataaacaacttcttttgcagcttatagcgtaagcgcttatgaataagttgtttatataacacaagatcaaataaagtgaaattctttttgtata 6466120  T
Q  195 atctattagttgtttttataagctat 220  Q
    |||||| ||||||||  |||||||||    
T  6466119 atctataagttgtttccataagctat 6466094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 4071832 - 4071904
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctat 220  Q
    |||||||||||||| |||||||||| ||| |||| | ||||| ||||| |||| ||||||| | |||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgttatgataagctat 4071904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 24929443 - 24929510
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataa 215  Q
    |||||||||||||| |||||||||| ||| | |||||||||| || || |||| ||||||||| ||||    
T  24929443 ctatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataa 24929510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 52645872 - 52645829
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgtttt 188  Q
    ||||||||||||||||| |||||||||||||  |||||||||||    
T  52645872 aagctatttctataacaaaagataaaatcaattcaaactgtttt 52645829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 13949951 - 13949893
Alignment:
Q  161 acaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    |||||||||||| ||| |||| ||||||| ||||| |||| |||||||| |||||||||    
T  13949951 acaagataaaataaagtcaaattgttttcatataagctataagttgtttgtataagcta 13949893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 50745947 - 50746017
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataa 215  Q
    ||||||||| ||||||| |||||||||| ||  |||||||||||  ||||| |||  ||||||||||||||    
T  50745947 aagctatttttataacaaaagataaaataaaatcaaactgtttttatataaactacaagttgtttttataa 50746017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 38478683 - 38478728
Alignment:
Q  139 atgaaaaagctatttctataacacaagataaaatcaaggcaaactg 184  Q
    ||||| ||||||||||||||||||||||||| || ||| |||||||    
T  38478683 atgaataagctatttctataacacaagataagataaagtcaaactg 38478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 54325157 - 54325084
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    |||||||||| ||| |||||||||| ||| |||||||||||| ||||| |||| || | |||| | ||||||||    
T  54325157 ctatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatc 54325084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 55870459 - 55870390
Alignment:
Q  150 atttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagcta 219  Q
    |||| ||||||| ||||| |||| ||| ||||||||||||  |||| |||| ||||||||| ||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagcta 55870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 20936122 - 20936066
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagt 204  Q
    |||||||||||||| |||||||||| ||| |||||| ||||| | ||| ||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaactattttcatgtaagctattagt 20936066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 47970265 - 47970309
Alignment:
Q  145 aagctatttctataacacaagataaaatcaaggcaaactgttttc 189  Q
    ||||||||||||||||| |||||||||| ||| |||||| |||||    
T  47970265 aagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 49219090 - 49219162
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| || ||||||| ||| |||| | ||||| ||||| |||| ||||||||| |||| |||||    
T  49219090 tatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatc 49219162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 27527 - 27599
Alignment:
Q  149 tatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| ||||||||| |||| |||||    
T  27527 tatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatc 27599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 20129 - 20197
Alignment:
Q  148 ctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataag 216  Q
    |||||||||||||  |||||||||| ||| ||||| ||| || ||||| |||||||||||||| |||||    
T  20129 ctatttctataaccaaagataaaataaagtcaaacagttatcatataagctattagttgttttcataag 20197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 143183 - 143109
Alignment:
Q  146 agctatttctataacacaagataaaatcaaggcaaactgttttcgtataatctattagttgtttttataagctatc 221  Q
    ||||||||||||||||||||||||||| | | ||||||| ||| |||||| |||| || || ||| ||||||||||    
T  143183 agctatttctataacacaagataaaataatgtcaaactgcttt-gtataacctataagctgatttcataagctatc 143109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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