View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_16 (Length: 208)
Name: NF14217_low_16
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 50272172 - 50271986
Alignment:
| Q |
19 |
atgaagtgaagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatg-----tatattcattc |
113 |
Q |
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| T |
50272172 |
atgaagtgaagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatgcaatgtatattcattc |
50272073 |
T |
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| Q |
114 |
atgtcatgtatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaattgatgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50272072 |
atgtcatgtatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaatcgatgatgt |
50271986 |
T |
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