View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14217_low_2 (Length: 630)

Name: NF14217_low_2
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14217_low_2
NF14217_low_2
[»] chr7 (8 HSPs)
chr7 (3-313)||(7143728-7144037)
chr7 (312-469)||(7142483-7142642)
chr7 (468-617)||(7141340-7141489)
chr7 (312-401)||(9405377-9405466)
chr7 (313-456)||(10670060-10670205)
chr7 (304-431)||(9070895-9071025)
chr7 (317-379)||(26839717-26839779)
chr7 (351-429)||(3400295-3400375)
[»] chr4 (6 HSPs)
chr4 (312-464)||(47024273-47024427)
chr4 (312-438)||(17024449-17024577)
chr4 (312-451)||(10451002-10451145)
chr4 (312-372)||(12806479-12806539)
chr4 (357-451)||(10319794-10319890)
chr4 (312-431)||(15192700-15192820)
[»] chr5 (5 HSPs)
chr5 (320-456)||(26329585-26329723)
chr5 (312-403)||(12265126-12265217)
chr5 (313-403)||(20715083-20715172)
chr5 (313-393)||(17028776-17028857)
chr5 (338-431)||(25681066-25681161)
[»] scaffold0650 (1 HSPs)
scaffold0650 (312-451)||(5257-5398)
[»] chr3 (4 HSPs)
chr3 (313-450)||(13911745-13911884)
chr3 (338-422)||(33578234-33578320)
chr3 (315-375)||(33914126-33914186)
chr3 (338-431)||(19218745-19218839)
[»] chr1 (4 HSPs)
chr1 (312-456)||(26657936-26658082)
chr1 (313-424)||(23519259-23519370)
chr1 (313-427)||(12810635-12810751)
chr1 (369-431)||(34533099-34533163)
[»] chr8 (4 HSPs)
chr8 (312-401)||(22892762-22892851)
chr8 (312-401)||(11309814-11309903)
chr8 (315-403)||(32239765-32239853)
chr8 (312-427)||(28900845-28900962)
[»] chr6 (2 HSPs)
chr6 (313-403)||(17860003-17860094)
chr6 (312-403)||(30235890-30235981)
[»] scaffold0282 (1 HSPs)
scaffold0282 (312-451)||(22140-22281)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 7144037 - 7143728
Alignment:
Q  3 aattatgattttttctttaaaagcctcaaaatcatatgcagataaagaagaagatggttacaaaacaaatttattgatgatcagatgttcaagagcaagc 102  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7144037 aattatgatattttctttaaaagcctcaaaatcatatgcagacaatgaagaagatggttacaaaacaactttattgatgatcagatgttcaagagcaagc 7143938  T
Q  103 aataaatagtaagaattcttatccaatggnnnnnnnctcatcgatctatgggacaacatcaacaattgttcgtggtattgtaggaggaaactgcctctga 202  Q
    |||| ||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  7143937 aatacatagtaagaattcttatccaatggaaaaaa-ctcattgatctatgggacaacatcaacaattgttggtggtattgtagcaggaaactgcctctga 7143839  T
Q  203 ggattgcatctgagatctagcagatccatctaatgtcgtacctctgcaagttgctccaaagcctctatgttagcttctaccgatgctttccaagattcgt 302  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  7143838 ggattgcatctgagatccagcagatccatctaatgtcgtacctctgcaagttgctccaaagcctctatgttagcttctaccgatgctttcctagattcct 7143739  T
Q  303 tcataccttga 313  Q
    |||||||||||    
T  7143738 tcataccttga 7143728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 312 - 469
Target Start/End: Complemental strand, 7142642 - 7142483
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||    
T  7142642 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgtcagtgttctaaatgaataataatgagtgcaagag 7142543  T
Q  410 tctctatttatagcaaatgattgggtaggatgtaggagaagagaactagtcttttgcact 469  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7142542 tctctatttatagcaaatgattaggtaggatgtaggagaagagaactagtcttttgcact 7142483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 468 - 617
Target Start/End: Complemental strand, 7141489 - 7141340
Alignment:
Q  468 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagaagcaacaaaaccttcacaaccttgaggagacttgaaatgag 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7141489 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagtagcaacaaaaccttcacaaccttgaggagacgtgaaatgag 7141390  T
Q  568 agcaatgtctcctcactatctaccacgcctagatgtcatacgagtataat 617  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||    
T  7141389 agcaatgtctccccattacctaccacgcctagatgtcatacgagtataat 7141340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 9405377 - 9405466
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 401  Q
    ||||||||||||||||||| ||||| |||||||||||||| | |||||||| |||||||||||||||| |||||| |||||| |||||||    
T  9405377 gagagaacaagagaaggaataaatcctgccttgaagctctgacgtttgacccttgtcttgaaccgttattgttctgaatgaaaaataatg 9405466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 313 - 456
Target Start/End: Original strand, 10670060 - 10670205
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagt 410  Q
    |||||||||||||| ||| ||||| ||||||||||| || |||||||||| |||  ||||||| | | |||| | |||||| ||||||  ||||| | ||    
T  10670060 agagaacaagagaacgaataaatcctgccttgaagccctgatgtttgacccttgctttgaaccatcaatgttttgaatgaaaaataatgagtgcaagggt 10670159  T
Q  411 ctctatttatagcaaatgattgggtaggatgtaggagaagagaact 456  Q
    |||||||||||| ||||||||||||||| | |||||||||| ||||    
T  10670160 ctctatttatagaaaatgattgggtagggtttaggagaagataact 10670205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 431
Target Start/End: Complemental strand, 9071025 - 9070895
Alignment:
Q  304 catacctt-gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat-- 400  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||  ||||||||||  ||||| | |||||||||||||      
T  9071025 cataccttagagagaagaagagaaggaagaaatcatgccttgaagctctgatgcttgacattttccttgaaccgtcggtgttttgaatgaataataataa 9070926  T
Q  401 gtgcacgagtctctatttatagcaaatgatt 431  Q
    ||||| | |||||||||||||| ||| ||||    
T  9070925 gtgcaagggtctctatttatagaaaaggatt 9070895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 26839717 - 26839779
Alignment:
Q  317 aacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgtta 379  Q
    |||||||||| ||||||||| |||||||||||||| ||| |||||| ||| ||||||||||||    
T  26839717 aacaagagaatgaagaaatcctgccttgaagctctgatgcttgacccttgccttgaaccgtta 26839779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 3400375 - 3400295
Alignment:
Q  351 taatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatga 429  Q
    ||||| |||||| | | |||||||||||||  |||||||||||||| |||  ||||| |||||||||||||||||| ||||    
T  3400375 taatgcttgaccctcgccttgaaccgttagatttctaaatgaataagaatgcgtgcaagagtctctatttatagcatatga 3400295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 464
Target Start/End: Original strand, 47024273 - 47024427
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||||| |||||||||||||| | ||||||||||||||||||||  ||||| | |    
T  47024273 gagagaacaagagaaggaagaaatcttgccttgaggctttgatgcttgacccttgtcttgaaccgtcaatgttctaaatgaataataattagtgcaaggg 47024372  T
Q  410 tctctatttatagcaaatgattgggtaggatgtaggagaagagaactagtctttt 464  Q
    ||||||||||||| |||| |||   |||| |||||||||||| | |||| |||||    
T  47024373 tctctatttatagaaaataattaattagggtgtaggagaagaaatctagactttt 47024427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 438
Target Start/End: Original strand, 17024449 - 17024577
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    ||||||||||||||| ||||||||||||||||| |||||  ||| |||||| ||| |||||||||| | |||||| |||||||||||||  ||| | | |    
T  17024449 gagagaacaagagaaagaagaaatcttgccttggagctccgatgcttgacccttgccttgaaccgtcaatgttctgaatgaataataatgagtgtaaggg 17024548  T
Q  410 tctctatttatagcaaatgattgggtagg 438  Q
    |||||||||||||  ||||||| ||||||    
T  17024549 tctctatttatagtgaatgattaggtagg 17024577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 312 - 451
Target Start/End: Original strand, 10451002 - 10451145
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacc-tttgtcttgaaccgtta-gtgtt-ctaaatgaataataatgtg--cac 406  Q
    |||||||||| ||||||||||| || |||||||||||||| |||||||||| |||| ||  |||||| | ||||| || |||||||||||||| |  ||     
T  10451002 gagagaacaaaagaaggaagaa-tcctgccttgaagctctgatgtttgaccctttgcctccaaccgtcaagtgtttctgaatgaataataatgagagcaa 10451100  T
Q  407 gagtctctatttatagcaaatgattgggtaggatgtaggagaaga 451  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||||    
T  10451101 gagtctcaatttatagaaaatgattgggtagggtttaggagaaga 10451145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 12806479 - 12806539
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttga 372  Q
    |||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  12806479 gagagaacaacaaaaggaagaaatattgtcttgaagctctgatgtttgacctttttcttga 12806539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 10319794 - 10319890
Alignment:
Q  357 ttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggtaggatgtaggagaaga 451  Q
    |||||| ||| ||| |||||||||||||||  ||||| |||||||  | ||   ||||||||||||||||||||||| |||||| | ||||||||||    
T  10319794 ttgacccttgccttcaaccgttagtgttctggatgaaaaataatgaattcaaatgtctctatttatagcaaatgattaggtagggtttaggagaaga 10319890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 15192820 - 15192700
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtg-ttctaaatgaataataat--gtgcacga 408  Q
    ||||||||||||||| ||||||  ||| |||||||||||||||| |||||| ||| |||| | ||| | || |||| |||||||||||||  || || ||    
T  15192820 gagagaacaagagaacgaagaatcctt-ccttgaagctctaatgcttgacccttgccttg-atcgtcaatgtttctgaatgaataataatgggtacaaga 15192723  T
Q  409 gtctctatttatagcaaatgatt 431  Q
     ||||||||||||| ||||||||    
T  15192722 atctctatttatagaaaatgatt 15192700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 320 - 456
Target Start/End: Original strand, 26329585 - 26329723
Alignment:
Q  320 aagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatt 417  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| ||||||||||| ||| | ||||||  ||||| | |  ||||||    
T  26329585 aagagaaggaagaaatcctgccttgaagctctaatgcttgacccttgccttgaaccattagtgttctatatggaaaataatgagtgcaagggcatctatt 26329684  T
Q  418 tatagcaaatgattgggtaggatgtaggagaagagaact 456  Q
    ||||||||| ||||||||||| | |||||||||| ||||    
T  26329685 tatagcaaacgattgggtagggtttaggagaagaaaact 26329723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 12265126 - 12265217
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 403  Q
    ||||||||||||||||||||||||| | ||||||| |||| ||| |||||| ||  ||||||||| | |  |||||||||||||||| ||||    
T  12265126 gagagaacaagagaaggaagaaatcctaccttgaaactctgatgcttgaccattaccttgaaccgctggctttctaaatgaataatattgtg 12265217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 20715172 - 20715083
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 403  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||| |||||| ||||||| |||| | | |||||||||||||| || |||||    
T  20715172 agagaacaagagaaggaagaa-tcttgctctgaagctctgatgcttgacccttgtctttaaccatcaatgttctaaatgaattattatgtg 20715083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 17028857 - 17028776
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgtt-ctaaatgaa 393  Q
    ||||||||||  |||||||||||  ||| |||||||||| |||||||||| ||| ||||||| |||| |||| |||||||||    
T  17028857 agagaacaaggtaaggaagaaatactgcattgaagctctgatgtttgacccttgccttgaactgttaatgttactaaatgaa 17028776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 431
Target Start/End: Complemental strand, 25681161 - 25681066
Alignment:
Q  338 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 431  Q
    ||||||||| | |||||| |||||| ||| ||||||||  |||  |||| ||| | ||||||||||  || | |||||||||||||||||||||||    
T  25681161 tgccttgaaaccctaatgcttgacccttgccttgaaccactagctttctgaataattaataatgtgtgcaagtgtctctatttatagcaaatgatt 25681066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 312 - 451
Target Start/End: Original strand, 5257 - 5398
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| |||||| ||| |||||||||| |||||||| |||||||||||||  ||||| | |    
T  5257 gagagaacaagagaatgaagaaatcctgccttgaagctctgatgcttgacccttgccttgaaccgtcagtgttcttaatgaataataatgagtgcaaggg 5356  T
Q  410 tctctatttatagcaaatgattgggtaggatgtaggagaaga 451  Q
    |||||||||||||  ||| | | |||||| | ||||||||||    
T  5357 tctctatttatagataataactaggtaggttttaggagaaga 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 450
Target Start/End: Complemental strand, 13911884 - 13911745
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagt 410  Q
    |||||||||||||||||| ||||| |||||||||||| | ||  |||||| ||| ||||||| || ||||| || ||| |||||||||  ||||| | ||    
T  13911884 agagaacaagagaaggaaaaaatcatgccttgaagctatgatacttgacccttgccttgaactgtcagtgtcctcaatcaataataatgagtgcaagggt 13911785  T
Q  411 ctctatttatagcaaatgattgggtaggatgtaggagaag 450  Q
    |||||||||||| ||||||||||||||||| | |||||||    
T  13911784 ctctatttatagaaaatgattgggtaggattttggagaag 13911745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 33578320 - 33578234
Alignment:
Q  338 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataata--atgtgcacgagtctctatttatag 422  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||  |||||||||||||| |   |||||| | ||||||||||||||    
T  33578320 tgccttgaagctctaatgtttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatag 33578234  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 33914126 - 33914186
Alignment:
Q  315 agaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaacc 375  Q
    |||||||||| |||||||||| ||| | |||| |||| |||||||||||||| ||||||||    
T  33914126 agaacaagaggaggaagaaattttgtcatgaaactctgatgtttgacctttgccttgaacc 33914186  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 431
Target Start/End: Original strand, 19218745 - 19218839
Alignment:
Q  338 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 431  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||  || | ||||||||| ||||||  || | |||||||||||||| | ||||||    
T  19218745 tgccttgaa-ctctgatgcttgacccttgtcttgaaccgttagctttattaatgaataagaatgtgtacaagggtctctatttatagaatatgatt 19218839  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 456
Target Start/End: Complemental strand, 26658082 - 26657936
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    ||||||||||||||| ||||||||| | |||||||||||| ||| |||||| ||| ||||||| |  |||||||| ||| || ||||||  ||||  | |    
T  26658082 gagagaacaagagaatgaagaaatcattccttgaagctctgatgcttgacccttgccttgaactgccagtgttctgaataaaaaataatgagtgctaggg 26657983  T
Q  410 tctctatttatagcaaatgattgggtaggatgtaggagaagagaact 456  Q
    | |||||||||| |||||||||||||||| | |||||||||| ||||    
T  26657982 tatctatttataacaaatgattgggtagggtttaggagaagaaaact 26657936  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 424
Target Start/End: Original strand, 23519259 - 23519370
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataa--tgtgcacgagt 410  Q
    ||||||||||||||||||| |||| | | ||||||||||||||||||||| ||| || | ||||| | |||||||||||||  ||||  |||||| | ||    
T  23519259 agagaacaagagaaggaag-aatcctacgttgaagctctaatgtttgacccttgcctag-accgtcaatgttctaaatgaactataatgtgtgcaagggt 23519356  T
Q  411 ctctatttatagca 424  Q
    ||||||||||||||    
T  23519357 ctctatttatagca 23519370  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 427
Target Start/End: Complemental strand, 12810751 - 12810635
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataata--atgtgcacgagt 410  Q
    |||||||||||||| ||  ||||| |||||||||||| | |  ||||||| ||  ||||||  || |||||||| |||||||||||  ||||||| ||||    
T  12810751 agagaacaagagaatgacaaaatcctgccttgaagctttgagttttgaccctttccttgaattgtcagtgttctgaatgaataataatatgtgcaagagt 12810652  T
Q  411 ctctatttatagcaaat 427  Q
     ||||||||||| ||||    
T  12810651 ttctatttatagaaaat 12810635  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 34533163 - 34533099
Alignment:
Q  369 ttgaaccgttagtgttctaaatgaataataa--tgtgcacgagtctctatttatagcaaatgatt 431  Q
    |||||| |||||| |||||||||||||| ||  |||||| ||||||||||||||| || ||||||    
T  34533163 ttgaactgttagttttctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgatt 34533099  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 22892762 - 22892851
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 401  Q
    ||||||||||||||||||||||||| | ||||||| |||| ||| |||||| ||| ||||||||||  ||||||| |||||| |||||||    
T  22892762 gagagaacaagagaaggaagaaatccttccttgaaactctgatgcttgacccttgccttgaaccgtccgtgttctgaatgaaaaataatg 22892851  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 11309814 - 11309903
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 401  Q
    ||||||||||||| ||||||| | |||| ||||||||||| |||||||||| ||||||||| |    |||||||| ||||||||||||||    
T  11309814 gagagaacaagaggaggaagataacttgtcttgaagctctgatgtttgaccattgtcttgatcttccagtgttctgaatgaataataatg 11309903  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 32239853 - 32239765
Alignment:
Q  315 agaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 403  Q
    |||||||||| |||| |||||||||||||  | |||||||||||||||||||  |||||||| |||  |||| ||| ||||||||||||    
T  32239853 agaacaagaggaggatgaaatcttgcctttgaactctaatgtttgacctttgcattgaaccgctagctttctgaataaataataatgtg 32239765  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 28900845 - 28900962
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 409  Q
    |||||||||  |||||||||||||| | |||||||||||| |||| | || ||||  ||||| ||| |||||||||||   ||||||||  |||||   |    
T  28900845 gagagaacacaagaaggaagaaatcctaccttgaagctctgatgtctaacttttgctttgaagcgtcagtgttctaaagccataataatgagtgcaatgg 28900944  T
Q  410 tctctatttatagcaaat 427  Q
    ||||||||||||| ||||    
T  28900945 tctctatttatagaaaat 28900962  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 17860003 - 17860094
Alignment:
Q  313 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttcta-aatgaataataatgtg 403  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||| |||  ||||||||| | ||||  | ||||||||||||||||    
T  17860003 agagaaccagagaaggaagaaatcatgccttgaagctctgatgtttgacccttgcattgaaccgtcaatgtttaagaatgaataataatgtg 17860094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 30235890 - 30235981
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 403  Q
    ||||||||||||| ||||||||||| | |||| || |||| |||||||||| || |||||||||| |||| |||| ||| || |||||||||    
T  30235890 gagagaacaagaggaggaagaaatcctaccttaaaactctgatgtttgacccttttcttgaaccgctagttttctgaataaaaaataatgtg 30235981  T

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Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 451
Target Start/End: Original strand, 22140 - 22281
Alignment:
Q  312 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtg-ttctaaatgaataataat--gtgcacga 408  Q
    ||||||| ||||||||||||||||| |||||||||||  | ||| ||||||| |  |||||| |  ||||| |||| |||||| ||||||  | ||| |     
T  22140 gagagaataagagaaggaagaaatcctgccttgaagcgatgatgcttgacctattccttgaa-ctatagtgtttctgaatgaaaaataatgagagcaagg 22238  T
Q  409 gtctctatttatagcaaatgattgggtaggatgtaggagaaga 451  Q
    ||||||| ||| | |||||||||||||||||| ||||||||||    
T  22239 gtctctagttaaatcaaatgattgggtaggatttaggagaaga 22281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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