View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_3 (Length: 591)
Name: NF14217_low_3
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Original strand, 42740365 - 42740936
Alignment:
| Q |
8 |
tatgtgtattcgcaagaaaaatagaagctttgtgtttgcaaagaccctttggctctccccgttgtgttttgtggaggttgggaaagcattgaggctttat |
107 |
Q |
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| T |
42740365 |
tatgtgtattcgcaagaaaaatagaagctttgtgtttgcaaagaccctttggctctccccgttgtgttttgtggaggttgggaaagcattgaggctttat |
42740464 |
T |
|
| Q |
108 |
atggctatattatgggtgtttgacctt--actagataacatggttttcactctttatt-aaaaaaggtggttgattctttttgaggaggaagcnnnnnnn |
204 |
Q |
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| T |
42740465 |
ctggctatattatgggtgtttgaccttcaacaagataacatggttttcactctttattaaaaaaaggtggttgattctttttaaggaggaagc----aaa |
42740560 |
T |
|
| Q |
205 |
nnnntactgcattcggaagtatcattaatggttgtaaacaattttgtaatttattttttaaaaactaacatgtggagtttactctaagacaagccaatag |
304 |
Q |
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| T |
42740561 |
aaaattctgcattcggaagtatcattaatggttgtaaaattttttgtaatttatttttttaaaactatcatgtcgagtttactcaaaggcaagccaatgt |
42740660 |
T |
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| Q |
305 |
aatcactcacgtcttagtgaaggtaacccaatatttaactagctactatttgtttactgatgcacctgtgtgtatttaccatttgatatctaatgaataa |
404 |
Q |
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||| |||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42740661 |
gatcgctcatgtcttagtgaaggtaacccaatatttagctagctcccatttgtttactgatgcacctccgtgtatttaccatttgatatctaatgaataa |
42740760 |
T |
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| Q |
405 |
gtatgttcccctnnnnnnnngttaccatgaagttcatatttaacacattttctttagcttcattttattatttctcttcattaaaatagtccttatttat |
504 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
42740761 |
gtatgttcccct-aaaaaaagttagcatgaagttcatatttaaaacattttctttagcttcattttattatttctcttcattaaaat--tctttatttat |
42740857 |
T |
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| Q |
505 |
tgcaaagcttctttaagttagtgtttaaccaaacttcttctcagaagttatttagacagggagatcattttcctcttaac |
584 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| |||||||||||||||| |||||| |
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| T |
42740858 |
cgcaaagctt-tttaagttagtgtttgaccaaacttcttcttaaaagttctttagatagggagatcattttccccttaac |
42740936 |
T |
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