View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_4 (Length: 505)
Name: NF14217_low_4
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 26 - 466
Target Start/End: Original strand, 6094201 - 6094660
Alignment:
| Q |
26 |
gaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
125 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094201 |
gaattgaagagttgcgattgaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
6094300 |
T |
|
| Q |
126 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094301 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
6094400 |
T |
|
| Q |
226 |
aagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatct |
325 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094401 |
aagttatctaatatgaatttccctctacttgattcatctttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatct |
6094500 |
T |
|
| Q |
326 |
cacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgatgcataag |
406 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6094501 |
cacaaaattcaatatagtctttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgatgcataag |
6094600 |
T |
|
| Q |
407 |
ccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
466 |
Q |
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| T |
6094601 |
ccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 44188026 - 44188523
Alignment:
| Q |
13 |
aatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctacca |
112 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
44188026 |
aatatgatgtagcgaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatcccttaatctcgaatcttaaacctacca |
44188125 |
T |
|
| Q |
113 |
acatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagac |
211 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44188126 |
acatgaacaatatggatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagac |
44188225 |
T |
|
| Q |
212 |
ttgatttttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaa |
311 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44188226 |
ttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaa |
44188325 |
T |
|
| Q |
312 |
ggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
44188326 |
ggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatg |
44188425 |
T |
|
| Q |
393 |
tgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataat |
490 |
Q |
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| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44188426 |
tattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctcctttgattgtgaactataat |
44188523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 32727153 - 32727650
Alignment:
| Q |
13 |
aatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctacca |
112 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
32727153 |
aatatgatgtagcaaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatcccttaatctcgaatcttaaacctacca |
32727252 |
T |
|
| Q |
113 |
acatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagac |
211 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32727253 |
acatgaacaatatgcatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagac |
32727352 |
T |
|
| Q |
212 |
ttgatttttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32727353 |
ttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaa |
32727452 |
T |
|
| Q |
312 |
ggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatg |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
32727453 |
ggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatg |
32727552 |
T |
|
| Q |
393 |
tgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataat |
490 |
Q |
| |
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| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32727553 |
tattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctcctttgattgtgaactataat |
32727650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 389 - 490
Target Start/End: Complemental strand, 43095660 - 43095559
Alignment:
| Q |
389 |
gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctata |
488 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
43095660 |
gatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttgattgtgaactata |
43095561 |
T |
|
| Q |
489 |
at |
490 |
Q |
| |
|
|| |
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|
| T |
43095560 |
at |
43095559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 43095774 - 43095731
Alignment:
| Q |
18 |
gatgtagcgaattgaagagttgcgattaaatgttagtgtaaaat |
61 |
Q |
| |
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| T |
43095774 |
gatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat |
43095731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 43095724 - 43095684
Alignment:
| Q |
343 |
ttttctcatttgtattgaaatccaacattactaaaaaacta |
383 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||| |
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|
| T |
43095724 |
ttttctcatttgtattgaaattcagcattactaaaatacta |
43095684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 13898007 - 13897925
Alignment:
| Q |
13 |
aatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctc |
95 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| || | | |||||||||||| | || ||||||||||||||| ||||||| |
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| T |
13898007 |
aatatgatgtggcaaattgaagagttgtgattggatttcaatgtaaaataactatacattgacaatgcatatcccgtaatctc |
13897925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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