View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_6 (Length: 446)
Name: NF14217_low_6
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 163 - 429
Target Start/End: Complemental strand, 1763844 - 1763564
Alignment:
| Q |
163 |
acatgagaagtgaggtttagatgagaagcttaactacttaaaaatgagtttgatatatacacatggaggaatactcttgacttggttcaagagtttaggt |
262 |
Q |
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| T |
1763844 |
acatgagaagtgaggtttagatgagaagcctaactacttaaaaatgagtttgatatatacacatggaggaatactcttgacttggttcaagagtttaggt |
1763745 |
T |
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| Q |
263 |
tccagctgttgtgaaggggatctgtgtccaaccaaggattggaccttggctcagtccaaaacacttttgatttcctattgcttttgtt------------ |
350 |
Q |
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| T |
1763744 |
tccaactgttgtgaaggggatctgtgtccaaccaaggattggaccttggctcagtccaaaacacttttgatttcctattgcttttgttgagtggtgagtt |
1763645 |
T |
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| Q |
351 |
--gagttcaatataatttgaactacatccatttaaaattgaaaagtcaaactagaaatattgaactgaatgatacatcatc |
429 |
Q |
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| T |
1763644 |
ttgagttcaagataatttgaactacatccatttaaaattgaaaagtcaaactagaaatattgaactgaatgatacatcatc |
1763564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1764029 - 1763867
Alignment:
| Q |
1 |
ttttggtagaaatcctttaattgtacaattgtgaattattcttcaaaccatatgaatgtaaaggttgaatccagagaggttgttggcagtttacaagata |
100 |
Q |
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| T |
1764029 |
ttttggtagaaatcctttaattgtacaattgtgaattattcttcaaaccatatgaatgtaaaggttgactccagagaggttgttggcagtttacaagata |
1763930 |
T |
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| Q |
101 |
gtatggctttgcaaaatgttgcgcactatattaaccttatgtggtacataatccgtgatttta |
163 |
Q |
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| T |
1763929 |
gtatggctttgcaaaatgttgcgcaccatattaaccttatgtggtacataatcaatgatttta |
1763867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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