View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_8 (Length: 406)
Name: NF14217_low_8
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 29217757 - 29218138
Alignment:
| Q |
15 |
actaagatggtaagtgaagaggacaataatttcaagtgagcataattagaactttcaatattatatgnnnnnnncaactgtttagttagctattaagaac |
114 |
Q |
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| T |
29217757 |
actaagatggtaagtgaagaggacaataatttcaagtgagcataattagaactttca-tattatatgaaaaaa-caactgtttagttagctattaagaac |
29217854 |
T |
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| Q |
115 |
caaaactaatagaaattgagtttcattagtgtcacataataaatatttgtcgaaaagaactgatattttccattgaaacttggtcattctgaagtgcaaa |
214 |
Q |
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| T |
29217855 |
caaaactaatagaaattgagtttcattagtgtcacataataaatatttgtcgaaaagaactgatattttccattgaaacttggtcattctgaagtgcaaa |
29217954 |
T |
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| Q |
215 |
atcaaaagttaattataactacccataatttattatgcatgtacatataataccaatcattgataggcaaatgttagtaatgtttgtaatcctctcaaca |
314 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29217955 |
atcaaaagttaattaaaactacccataatttattatgcatgtacatataataccaatcattgataggcaaatgttagtaatgtttgtaatcctctcaaca |
29218054 |
T |
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| Q |
315 |
atcctagactgctcgataatcaaaagcaaaataatgcatctaaatggctaatacctcgaggttcttcaccctcaccatgtctct |
398 |
Q |
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| T |
29218055 |
atcctggactgctagataatcaaaagcaaaataatgcatctaaatggctaatacctcgaggttcttcaccctcaccatgtctct |
29218138 |
T |
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