View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14217_low_9 (Length: 370)
Name: NF14217_low_9
Description: NF14217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14217_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3924723 - 3924909
Alignment:
| Q |
1 |
cagtgttacaagtaccaatgtcacgagataaattcaaataagttaatcgagacatacacttgctactatagacatttagaaatgagaagaaatcatgtta |
100 |
Q |
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| T |
3924723 |
cagtgttacaagtatctatgtcacgagataaattcaaataagtcaatcgagacatatgcttgctactatagacatttagaaatgagaagaaatcatgtta |
3924822 |
T |
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| Q |
101 |
taaatataggatttgcttttataataaacagtataaagaaacacaaaaatatgaccagcaaggaaaataaat---gcaaatttcatt |
184 |
Q |
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| T |
3924823 |
taaatataggatttgcttttataataaacagtataaagaaacacaaaaatatgaccagcaaggaaaataaatctagcaaatttcatt |
3924909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 3924993 - 3925076
Alignment:
| Q |
270 |
gtcatatgaaccataattaagaagtacatgagtcaaaattttataatgtatactgtatttgatcccaaaattgaacacatgaat |
353 |
Q |
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| T |
3924993 |
gtcatatgaaccataattaagaagtacatgagtcaaaattttataatgtatactgtatttgatcccaaaattgaacacatgaat |
3925076 |
T |
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