View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14218_high_7 (Length: 349)

Name: NF14218_high_7
Description: NF14218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14218_high_7
NF14218_high_7
[»] chr6 (5 HSPs)
chr6 (7-334)||(31340561-31340889)
chr6 (8-49)||(4996877-4996918)
chr6 (8-49)||(4480479-4480520)
chr6 (11-52)||(7974793-7974834)
chr6 (8-49)||(8329640-8329681)
[»] chr3 (8 HSPs)
chr3 (194-333)||(45723849-45723987)
chr3 (8-49)||(24273962-24274003)
chr3 (10-49)||(24657416-24657455)
chr3 (11-54)||(46316562-46316605)
chr3 (8-49)||(10473996-10474037)
chr3 (8-49)||(27396859-27396900)
chr3 (8-52)||(24751755-24751799)
chr3 (13-49)||(32946439-32946475)
[»] chr8 (6 HSPs)
chr8 (8-54)||(39666977-39667023)
chr8 (1-49)||(16395378-16395426)
chr8 (8-54)||(25893851-25893897)
chr8 (8-54)||(41897824-41897870)
chr8 (8-49)||(18040141-18040182)
chr8 (8-49)||(43820873-43820914)
[»] chr4 (4 HSPs)
chr4 (9-49)||(36752364-36752404)
chr4 (8-49)||(12694528-12694569)
chr4 (8-49)||(18813375-18813416)
chr4 (8-49)||(35318545-35318586)
[»] chr2 (4 HSPs)
chr2 (8-52)||(4014895-4014939)
chr2 (10-52)||(23458682-23458724)
chr2 (8-52)||(7975096-7975140)
chr2 (8-52)||(31516287-31516331)
[»] scaffold0595 (1 HSPs)
scaffold0595 (8-49)||(350-391)
[»] chr7 (4 HSPs)
chr7 (8-49)||(6327216-6327257)
chr7 (8-49)||(17895639-17895680)
chr7 (8-49)||(29151588-29151629)
chr7 (8-52)||(10061098-10061142)
[»] chr5 (3 HSPs)
chr5 (8-49)||(10154244-10154285)
chr5 (8-49)||(22620733-22620774)
chr5 (8-49)||(37067706-37067747)
[»] chr1 (7 HSPs)
chr1 (8-49)||(4126580-4126621)
chr1 (5-54)||(11797478-11797527)
chr1 (8-49)||(32880661-32880702)
chr1 (8-49)||(39522840-39522881)
chr1 (8-52)||(11786105-11786149)
chr1 (9-49)||(48731839-48731879)
chr1 (8-52)||(49500863-49500907)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 31340561 - 31340889
Alignment:
Q  7 tcggcctaacaatttcagcatattgtcagttgagttaggacttgtgaannnnnnnnnnaaatacaaaataaaatgtttgtttggtgtcacaaatgattt- 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||     
T  31340561 tcggcctaacaatttcggcatattgtcagttgagttaggacttgtgaattttttttttaaatacaaaataaaatgtttgtttggtgtcacaaatgatttt 31340660  T
Q  106 gtcaaaataatttcataaaataactttttcgattcaacaaaatcatgatatcattttaattttatccaatcgatttttgtttgacatctgttttttaatc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31340661 gtcaaaataatttcataaaataactttttcgattcaacaaaatcatgatatcattttaattttatccactcgatttttgtttgacatctgttttttaatc 31340760  T
Q  206 gggtttctacaaaggacaagctagttcaaaggtgtgttttaacagataatgaccaaggttgcgttgcgaattgtggtgtgccaatgagaacatagatcac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  31340761 gggtttctacaaaggacaagctagttcaaaggtgtgttttaacagataatgactaaggttgcgttacaaattgtggtgtgccaatgagaacatagatcac 31340860  T
Q  306 ttgtttattaattatgcttttttggtggt 334  Q
    ||||||||||||| |||||||||||||||    
T  31340861 ttgtttattaattgtgcttttttggtggt 31340889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 4996918 - 4996877
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  4996918 cggcctaacaatttcagcattttgtcagttgagctaggactt 4996877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 4480520 - 4480479
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  4480520 cggcctaacaatttcggcattttgccagttgagttaggactt 4480479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 7974793 - 7974834
Alignment:
Q  11 cctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7974793 cctaacaatttcggcattttgtcagttgaggtaggacttgtg 7974834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 8329640 - 8329681
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||||||| |||||||| ||||||||    
T  8329640 cggcctaacaatttcggcatattgccagttgagctaggactt 8329681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 333
Target Start/End: Original strand, 45723849 - 45723987
Alignment:
Q  194 tgttttttaatcgggtttctacaaaggacaagctagttcaaaggtgtgttttaacagataatgaccaaggttgcgttgcgaattgtggtgtgccaatgag 293  Q
    ||||| ||||||||||  |||||||||| ||| || |||||| | |||||||| | |||| ||||||||||||||||||||||||||  |||||||||||    
T  45723849 tgtttcttaatcgggtgcctacaaaggataagttacttcaaaagcgtgttttagctgatattgaccaaggttgcgttgcgaattgtg--gtgccaatgag 45723946  T
Q  294 aacatagatcacttgtttattaattatg-cttttttggtgg 333  Q
    |||| |||||||||||||||||||| || ||||||||||||    
T  45723947 aacaaagatcacttgtttattaattgtgccttttttggtgg 45723987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 24273962 - 24274003
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  24273962 cggcctaacaatttcggcattttgtcagttgagttaggactt 24274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 24657455 - 24657416
Alignment:
Q  10 gcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  24657455 gcctaacaatttcggcattttgtcagttgagttaggactt 24657416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 46316562 - 46316605
Alignment:
Q  11 cctaacaatttcagcatattgtcagttgagttaggacttgtgaa 54  Q
    |||||||||||| |||| || |||||||||||||||||||||||    
T  46316562 cctaacaatttcggcattttttcagttgagttaggacttgtgaa 46316605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 10473996 - 10474037
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  10473996 cggcctaacaatttcagcattttgccagttgagctaggactt 10474037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 27396900 - 27396859
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  27396900 cggcctaacaatttcggcattttgtcagttgagctaggactt 27396859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24751799 - 24751755
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  24751799 cggcctaacaatttcggcattttgccagttgagctaggacttgtg 24751755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 32946439 - 32946475
Alignment:
Q  13 taacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  32946439 taacaatttcagcattttgacagttgagttaggactt 32946475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 39666977 - 39667023
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtgaa 54  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  39666977 cggcctaacaatttcggcattttgtcagttgagttaggacttctgaa 39667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16395426 - 16395378
Alignment:
Q  1 tagtattcggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||| |||||||||||||||||||| ||  |||||||||||||||||    
T  16395426 tagtatccggcctaacaatttcagcattttaccagttgagttaggactt 16395378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 25893897 - 25893851
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtgaa 54  Q
    |||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  25893897 cggcctaacaatttcagcattttgccagttgagctaggacttctgaa 25893851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 41897870 - 41897824
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtgaa 54  Q
    ||||||||||||||| | || ||||||||||||||||||||| ||||    
T  41897870 cggcctaacaatttcggtattttgtcagttgagttaggacttctgaa 41897824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 18040182 - 18040141
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||||||||| || ||||||||| ||||||||    
T  18040182 cggcctaacaatttcagcattttatcagttgagctaggactt 18040141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 43820914 - 43820873
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  43820914 cggcctaacaatttcggcattttgccagttgagttaggactt 43820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 36752404 - 36752364
Alignment:
Q  9 ggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  36752404 ggcctaacaatttcggcattttgtcagttgagttaggactt 36752364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 12694569 - 12694528
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||| ||||||||| |||||||||||| ||||||||    
T  12694569 cggcctaacagtttcagcattttgtcagttgagctaggactt 12694528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 18813416 - 18813375
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  18813416 cggcctaacaatttcggcattttgccagttgagttaggactt 18813375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 35318586 - 35318545
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  35318586 cggcctaacaatttcggcattttgccagttgagttaggactt 35318545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 4014895 - 4014939
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| |||||||||||| |||||||||||    
T  4014895 cggcctaacaatttcggcattttgtcagttgagctaggacttgtg 4014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23458724 - 23458682
Alignment:
Q  10 gcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  23458724 gcctaacaatttcagcatttttccagttgagttaggacttgtg 23458682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 7975096 - 7975140
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  7975096 cggcctaacaatttcggcattttgccagttgagctaggacttgtg 7975140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 31516287 - 31516331
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||    
T  31516287 cggcctaacaatttcggcatttttccagttgagttaggacttgtg 31516331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 391 - 350
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||||||| |||||||| ||||||||    
T  391 cggcctaacaatttcggcatattgccagttgagctaggactt 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 6327257 - 6327216
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  6327257 cggcctaacaatttttgcattttgtcagttgagttaggactt 6327216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 17895680 - 17895639
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  17895680 cggcctaacaatttcagcattttgccagttgagctaggactt 17895639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 29151629 - 29151588
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  29151629 cggcctaacaatttcagcattttgccagttgagctaggactt 29151588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 10061098 - 10061142
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  10061098 cggcctaacaatttcggcattttgccagttgagctaggacttgtg 10061142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 10154244 - 10154285
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||| |||||||| |||| |||||||||||||||||||||    
T  10154244 cggcctgacaatttcggcattttgtcagttgagttaggactt 10154285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 22620733 - 22620774
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  22620733 cggcctaacaatttcggcattttgtcagttgagctaggactt 22620774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 37067747 - 37067706
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  37067747 cggcctaacaatttcggcattttgtcagttgaggtaggactt 37067706  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 4126621 - 4126580
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  4126621 cggcctaacaatttccgcattttgtcagttgagctaggactt 4126580  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 11797478 - 11797527
Alignment:
Q  5 attcggcctaacaatttcagcatattgtcagttgagttaggacttgtgaa 54  Q
    ||||||||||||||||||  ||| ||| ||||||||||||||||| ||||    
T  11797478 attcggcctaacaatttcgacattttgccagttgagttaggacttttgaa 11797527  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 32880661 - 32880702
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  32880661 cggcctaacaatttcggcattttgccagttgagttaggactt 32880702  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 39522840 - 39522881
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  39522840 cggcctaacaatttctgcattttgccagttgagttaggactt 39522881  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 11786149 - 11786105
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    |||||||||||||||||||| || ||||||||| ||| |||||||    
T  11786149 cggcctaacaatttcagcattttatcagttgagctagaacttgtg 11786105  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 48731839 - 48731879
Alignment:
Q  9 ggcctaacaatttcagcatattgtcagttgagttaggactt 49  Q
    |||||||||||||| |||| |||||||||||| ||||||||    
T  48731839 ggcctaacaatttcggcattttgtcagttgagctaggactt 48731879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 49500907 - 49500863
Alignment:
Q  8 cggcctaacaatttcagcatattgtcagttgagttaggacttgtg 52  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  49500907 cggcctaacaatttcggcattttgccagttgagctaggacttgtg 49500863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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