View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14218_high_8 (Length: 347)
Name: NF14218_high_8
Description: NF14218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14218_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 37444206 - 37443888
Alignment:
| Q |
3 |
aaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaacca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444206 |
aaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaacca |
37444107 |
T |
|
| Q |
103 |
aaattataagctatttttggaaagcttactgaaataagtagaaaatgtatcaatatgtgtgtatttgaacactaaaaagcgcttatctcatttagtaagc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444106 |
aaattataagctatttttggaaagcttact------------------atcaatatgtgtgtatttgaacactaaaaagcgcttatctcatttagtaagc |
37444025 |
T |
|
| Q |
203 |
tcttccatattccctcgcgtagacggtgcttcatagtattccactagttacaatgtttttattttccttacccctccctttctatatctgcttcatcctt |
302 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444024 |
tcttccatatgccctcgcgtagacggtgcttcatagtattccactagttacaatgtttttattttccttacccctccctttctatatctgcttcatcctt |
37443925 |
T |
|
| Q |
303 |
tcaatgaagtatccctctgtagatggagatacattgc |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37443924 |
tcaatgaagtatccctctgtagatggagatacattgc |
37443888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 7492522 - 7492676
Alignment:
| Q |
7 |
acattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaaccaaaat |
106 |
Q |
| |
|
|||||||||| |||| | || |||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||| |||| |
|
|
| T |
7492522 |
acattgacttggctaagatagctgttgttaaaaggaggattgagtgagcaatggtgcaaaagagaggata----gaatgaaaccaattttgaacctaaat |
7492617 |
T |
|
| Q |
107 |
tataagcta-----tttttggaaagcttactgaaataagtagaaaatgtatcaatatgt |
160 |
Q |
| |
|
|||| |||| |||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
7492618 |
tataggctagtagtattttggaaagcttattgaattaagtagaaaaattatcaatatgt |
7492676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University