View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14218_low_1 (Length: 549)
Name: NF14218_low_1
Description: NF14218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14218_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 47037964 - 47038482
Alignment:
| Q |
16 |
gtatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcataacaaaatattgggttgattaatagatga |
115 |
Q |
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| T |
47037964 |
gtatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcataacaaaatattgggttgattaatagatga |
47038063 |
T |
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| Q |
116 |
tggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgtt |
215 |
Q |
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| T |
47038064 |
tggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgtt |
47038163 |
T |
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| Q |
216 |
caaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttcaagagccgcttgaagggcttcaactctagaaccgtctttggta |
315 |
Q |
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| T |
47038164 |
caaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttgaagagccgcttgaagagcatcaactctagcaccgactttggta |
47038263 |
T |
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| Q |
316 |
gcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtcgttgttttcttcgtcgtcttcgagcaataattcggggaaattaagac |
415 |
Q |
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| T |
47038264 |
gcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtccttgttttcttcgtcgtcttcgagcaataattcggggaaattaagac |
47038363 |
T |
|
| Q |
416 |
gagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaagaacctaaccatattcttgatcttttatt |
515 |
Q |
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| T |
47038364 |
gagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaagaacctaaccatattcttgatcttttatt |
47038463 |
T |
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| Q |
516 |
tggttctcttatctctgct |
534 |
Q |
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| T |
47038464 |
tggttctcttatttctgct |
47038482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 533
Target Start/End: Complemental strand, 5681578 - 5681526
Alignment:
| Q |
481 |
atgtaagaacctaaccatattcttgatcttttatttggttctcttatctctgc |
533 |
Q |
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| T |
5681578 |
atgtaagaacctaaccaaattcttgatcttttgtttggttctctaatctctgc |
5681526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 24174098 - 24174050
Alignment:
| Q |
484 |
taagaacctaaccatattcttgatcttttatttggttctcttatctctg |
532 |
Q |
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| T |
24174098 |
taagaacctaaccatattcttgttttttgatttggtgctcttatttctg |
24174050 |
T |
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