View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_high_3 (Length: 554)
Name: NF14219_high_3
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Original strand, 3592144 - 3592668
Alignment:
| Q |
15 |
cacagattctaatcagtaccaaagatcaatcagaaggtaataatgaagagtttggtattggtaatggcatgtttctgagttcatctatgccctttcatca |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592144 |
cacagaatctaatcagtaccaaagatcaatcagaaggtaataatgaagagtttggtattggtaatggcatgtttctgagttcatctatgccctttcatca |
3592243 |
T |
|
| Q |
115 |
aaaccaaagctttatattcccattctcaaactcaagcactttaaggtcaactaatggatataactatggtgatgaagagtttaaaataatggaggagtca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592244 |
aaaccaaagctttatattcccattctcaaactcaagcactttaaggtcaaataatggatataactatggtgatgaagagtttaaaataatggaggagtca |
3592343 |
T |
|
| Q |
215 |
actattaacaacagtgcaatgccaagcactagtgggagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggatatgtcaaact |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592344 |
actattaacaacagtgcaatgccaagcactagtggtagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggatatgtcaaact |
3592443 |
T |
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| Q |
315 |
attggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaacctt-nnnnnnnncgaaccggacagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3592444 |
attggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttaaaaaaaaacgaaccggacagt |
3592543 |
T |
|
| Q |
414 |
tcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaagacggttgaatcatgatctagaagtctcacctgttcgatgtcc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592544 |
tcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaacacggttgaatcatgatctagaagtctcacctgttcgatgtcc |
3592643 |
T |
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| Q |
514 |
agttcaggttttaaaccattgcttt |
538 |
Q |
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| T |
3592644 |
agttcaggttttaaaccattgcttt |
3592668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 35722336 - 35722446
Alignment:
| Q |
285 |
caacaagtagtggaatggatatgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttcc---ttgggatgattctga |
381 |
Q |
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|||||||| |||| ||||| | ||||| ||||||| |||||| || |||||||| ||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
35722336 |
caacaagtggtggcatggaaagttcaaagtattggaattgggaagacattgattcattggtttcaactgatctaaagaatccttattgggatgattctga |
35722435 |
T |
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| Q |
382 |
tatcaaacctt |
392 |
Q |
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||||||||||| |
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| T |
35722436 |
tatcaaacctt |
35722446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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