View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_high_5 (Length: 305)
Name: NF14219_high_5
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 36923776 - 36923499
Alignment:
| Q |
20 |
ccgctaacgtctcaattataaaatattcnnnnnnntaaagacataaatgaagaacaaaacaacaaatatagaagcctaacctgatttggcaggttctctg |
119 |
Q |
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| T |
36923776 |
ccgctaacgtctcaattataaaatattcaaaaaaataaagacataaatgaagaacaaaacaacaaaaatagaagcctaacctgatttggcaggttctctg |
36923677 |
T |
|
| Q |
120 |
ccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36923676 |
ccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagc |
36923577 |
T |
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| Q |
220 |
atgcataatcataaaccctatcccacttttcaagcttgccttttccatcacctcttaaagtctctagctcttcttctc |
297 |
Q |
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| T |
36923576 |
atgcataatcataaaccctatcccacttttcaagctggccttttccatcacctcttaaagtctctagctcttcttctc |
36923499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 47129164 - 47129223
Alignment:
| Q |
187 |
gacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccact |
246 |
Q |
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| T |
47129164 |
gaccattatctggagttcccaagtcattgtagcatgcatagtcatacactctatcccact |
47129223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 46711718 - 46711840
Alignment:
| Q |
122 |
agttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagcat |
221 |
Q |
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| T |
46711718 |
agttcttcccctgcgagggtaaggatattcactggaccctccaagaactggacgaacatatttcggacctttatcaggatccgccaaatcattatagtat |
46711817 |
T |
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| Q |
222 |
gcataatcataaaccctatccca |
244 |
Q |
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||||||||||||||||| ||||| |
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| T |
46711818 |
gcataatcataaaccctgtccca |
46711840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 36744130 - 36744008
Alignment:
| Q |
95 |
ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta |
194 |
Q |
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|||||||| ||||| |||| ||||| ||||||||||| ||||| || ||| ||| || ||| ||||| ||||| ||||||| | | || ||| ||| |
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| T |
36744130 |
ctaacctgttttggtcggttttctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta |
36744031 |
T |
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| Q |
195 |
tcaggatttcccaaatcattgta |
217 |
Q |
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|| |||||||||||||||||||| |
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| T |
36744030 |
tctggatttcccaaatcattgta |
36744008 |
T |
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