View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14219_high_7 (Length: 259)

Name: NF14219_high_7
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14219_high_7
NF14219_high_7
[»] scaffold0185 (1 HSPs)
scaffold0185 (10-259)||(7646-7897)
[»] scaffold0041 (1 HSPs)
scaffold0041 (40-117)||(67493-67570)
[»] chr7 (19 HSPs)
chr7 (40-117)||(40898714-40898791)
chr7 (40-117)||(33996078-33996155)
chr7 (40-107)||(40746273-40746340)
chr7 (40-106)||(44874356-44874422)
chr7 (40-117)||(40746032-40746109)
chr7 (38-106)||(10903091-10903159)
chr7 (38-106)||(21054963-21055031)
chr7 (40-115)||(8075867-8075942)
chr7 (40-106)||(3392990-3393056)
chr7 (38-116)||(6001435-6001513)
chr7 (40-98)||(14540759-14540817)
chr7 (40-106)||(21861537-21861603)
chr7 (40-106)||(25620144-25620210)
chr7 (40-106)||(29469848-29469914)
chr7 (40-106)||(34027401-34027467)
chr7 (40-106)||(48243071-48243137)
chr7 (42-107)||(1596838-1596903)
chr7 (42-102)||(31892161-31892221)
chr7 (38-117)||(41191020-41191099)
[»] chr8 (12 HSPs)
chr8 (38-119)||(16962243-16962324)
chr8 (42-106)||(28069367-28069431)
chr8 (40-107)||(38475755-38475822)
chr8 (40-106)||(4828076-4828142)
chr8 (40-106)||(39743537-39743603)
chr8 (40-107)||(4828301-4828368)
chr8 (40-99)||(5675751-5675810)
chr8 (40-119)||(37001472-37001551)
chr8 (40-106)||(19256596-19256662)
chr8 (40-106)||(24075316-24075382)
chr8 (56-106)||(37001250-37001300)
chr8 (40-117)||(5931948-5932025)
[»] chr2 (18 HSPs)
chr2 (40-105)||(40149014-40149079)
chr2 (40-117)||(7748239-7748316)
chr2 (40-105)||(40718218-40718283)
chr2 (40-106)||(19191620-19191686)
chr2 (40-106)||(28407803-28407869)
chr2 (42-105)||(5851692-5851756)
chr2 (40-115)||(2324248-2324323)
chr2 (38-117)||(14927299-14927378)
chr2 (40-106)||(16419510-16419576)
chr2 (40-118)||(17719408-17719486)
chr2 (40-106)||(25082547-25082613)
chr2 (40-106)||(29718336-29718402)
chr2 (56-106)||(31222545-31222595)
chr2 (40-118)||(36352157-36352235)
chr2 (40-106)||(40379219-40379285)
chr2 (40-106)||(40379454-40379520)
chr2 (41-106)||(17719575-17719640)
chr2 (40-81)||(33606089-33606130)
[»] chr3 (20 HSPs)
chr3 (58-106)||(37246677-37246725)
chr3 (42-106)||(38791460-38791524)
chr3 (40-106)||(4155567-4155633)
chr3 (40-101)||(272429-272490)
chr3 (40-120)||(8018976-8019056)
chr3 (40-107)||(8487522-8487588)
chr3 (40-118)||(23708222-23708300)
chr3 (40-118)||(23726678-23726756)
chr3 (40-118)||(23745134-23745212)
chr3 (40-118)||(24063659-24063737)
chr3 (40-106)||(1723086-1723152)
chr3 (40-106)||(11589793-11589859)
chr3 (40-106)||(54368524-54368590)
chr3 (57-122)||(6487327-6487392)
chr3 (42-115)||(20327615-20327688)
chr3 (40-105)||(20327860-20327925)
chr3 (56-117)||(43781607-43781668)
chr3 (42-118)||(20303062-20303138)
chr3 (38-106)||(29215599-29215667)
chr3 (38-118)||(45828025-45828105)
[»] chr6 (18 HSPs)
chr6 (40-106)||(27772722-27772788)
chr6 (42-106)||(6054413-6054477)
chr6 (40-118)||(5648670-5648748)
chr6 (40-106)||(8566969-8567034)
chr6 (40-106)||(19639123-19639189)
chr6 (38-103)||(25065107-25065172)
chr6 (40-81)||(30711251-30711292)
chr6 (40-100)||(3823312-3823372)
chr6 (38-118)||(30656630-30656710)
chr6 (38-106)||(33494545-33494613)
chr6 (40-106)||(2736177-2736243)
chr6 (40-106)||(4868587-4868653)
chr6 (40-106)||(4868823-4868889)
chr6 (56-106)||(6542719-6542769)
chr6 (40-106)||(8026397-8026463)
chr6 (40-106)||(21690730-21690796)
chr6 (42-106)||(17147670-17147734)
chr6 (38-106)||(30256819-30256886)
[»] chr1 (17 HSPs)
chr1 (40-106)||(51589814-51589880)
chr1 (40-105)||(52961590-52961655)
chr1 (40-106)||(51589000-51589066)
chr1 (54-106)||(27413369-27413421)
chr1 (43-114)||(5953198-5953269)
chr1 (40-103)||(12244975-12245038)
chr1 (40-107)||(25137312-25137379)
chr1 (40-107)||(31181522-31181589)
chr1 (40-103)||(39348365-39348428)
chr1 (40-106)||(4112550-4112616)
chr1 (40-106)||(4113016-4113082)
chr1 (40-118)||(16162941-16163019)
chr1 (40-106)||(40079160-40079226)
chr1 (40-106)||(51589234-51589300)
chr1 (43-104)||(26176919-26176980)
chr1 (38-103)||(41035840-41035905)
chr1 (42-106)||(17452689-17452753)
[»] scaffold0048 (1 HSPs)
scaffold0048 (186-259)||(84716-84789)
[»] chr5 (22 HSPs)
chr5 (38-105)||(17015890-17015957)
chr5 (38-117)||(33337237-33337316)
chr5 (40-106)||(20225049-20225115)
chr5 (56-106)||(24647720-24647770)
chr5 (40-106)||(27133003-27133069)
chr5 (40-106)||(38976941-38977007)
chr5 (40-118)||(43117890-43117968)
chr5 (40-96)||(15438885-15438941)
chr5 (56-118)||(15480583-15480645)
chr5 (40-118)||(24346499-24346577)
chr5 (40-106)||(24531607-24531673)
chr5 (56-106)||(29909731-29909781)
chr5 (40-106)||(41666767-41666833)
chr5 (40-106)||(41667003-41667069)
chr5 (40-105)||(95277-95342)
chr5 (40-105)||(7607602-7607667)
chr5 (57-118)||(24269869-24269930)
chr5 (40-105)||(24528548-24528613)
chr5 (40-72)||(3859352-3859384)
chr5 (38-102)||(20510656-20510720)
chr5 (56-120)||(25258090-25258154)
chr5 (56-120)||(25321880-25321944)
[»] scaffold0766 (1 HSPs)
scaffold0766 (40-106)||(6282-6348)
[»] chr4 (16 HSPs)
chr4 (40-106)||(9685640-9685706)
chr4 (40-118)||(11036744-11036822)
chr4 (40-106)||(18528227-18528293)
chr4 (40-106)||(22231083-22231149)
chr4 (40-106)||(35788667-35788733)
chr4 (38-96)||(53699033-53699091)
chr4 (40-118)||(53828521-53828599)
chr4 (40-117)||(53828288-53828365)
chr4 (40-106)||(16066073-16066139)
chr4 (40-106)||(21498803-21498869)
chr4 (40-106)||(22827546-22827612)
chr4 (56-106)||(50543577-50543627)
chr4 (56-105)||(5398487-5398536)
chr4 (40-81)||(27634116-27634157)
chr4 (57-117)||(21685023-21685083)
chr4 (42-106)||(22231318-22231382)
[»] scaffold0092 (1 HSPs)
scaffold0092 (38-103)||(5896-5961)
[»] scaffold0129 (1 HSPs)
scaffold0129 (40-106)||(14311-14377)
[»] scaffold0047 (1 HSPs)
scaffold0047 (56-118)||(12671-12733)
[»] scaffold0050 (1 HSPs)
scaffold0050 (40-92)||(69557-69609)
[»] scaffold0024 (1 HSPs)
scaffold0024 (38-118)||(89551-89631)


Alignment Details
Target: scaffold0185 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7897 - 7646
Alignment:
Q  10 tcgaagaaaatatggcctga-catgtgtttatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgtta-ggtccaaccaca 107  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7897 tcgaataaaacatggcctgaacatgtgtttatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaaggtccaaccaca 7798  T
Q  108 gtttttaagatttataatcgtcccttgtggaaaccataatatttttaaagcattgctaaagannnnnnnagcttaaagatcattttttagacataagtat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| | ||||    
T  7797 gtttttaagatttataatcgtcccttgtggaaaccataatatttttaaagcattgctaaagatttttttagcttaaagatcattttttagacagatgtat 7698  T
Q  208 taataccggtgaaatgcaaattttttgcaaagtaaattttctatacaacaac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7697 taataccggtgaaatgcaaattttttgcaaagtaaattttctatacaacaac 7646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 67493 - 67570
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||  || |||||||||||| ||||||||||||| | |||||||||| |||||||||||| |||||||||    
T  67493 tgtttataagtgggggcaatcctcaccttacaaaccgattttgtggagttgtgtttggtccaaccacaatttttaaga 67570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 40898791 - 40898714
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||  || |||||||||||| ||||||||||||| | |||||||||| |||||||||||| |||||||||    
T  40898791 tgtttataagtgggggcaatcctcaccttacaaaccgattttgtggagttgtgtttggtccaaccacaatttttaaga 40898714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 33996155 - 33996078
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||| ||  |||||||||||||||||||| || ||||||| ||||||| |||||| |||||||  |||||||||    
T  33996155 tgtttatacgtggggacaatcctcacctcacaagcccattttatggagttgtattaggttcaaccacgatttttaaga 33996078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 40746273 - 40746340
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    ||||||||||| ||| |||||||||||||| || |||||||| | | ||||||||||| |||||||||    
T  40746273 tgtttataagtgagggcaatcctcacctcataagccgattttgtggggttgtgttaggcccaaccaca 40746340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 44874422 - 44874356
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  ||  ||||||||||||||||||||||||| ||  ||||||||||| ||||||||    
T  44874422 tgtttataagtgggggaaatcctcacctcacaaaccgattttgtatggttgtgttaggcccaaccac 44874356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 40746109 - 40746032
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||| | |||||||| |||||||||||||||||||| | |  |||||||||  ||||||||| ||| |||||    
T  40746109 tgtttataagaagggacaatcttcacctcacaaaccgattttgtgggattgtgttagacccaaccacaatttctaaga 40746032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 10903091 - 10903159
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||| ||  |||||||||||||||| ||| |||| | ||||||||||||  ||||||||    
T  10903091 tatgtttataagtaggggtaatcctcacctcacaagccggttttgtggagttgtgttagccccaaccac 10903159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 21055031 - 21054963
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  21055031 tatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 21054963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 8075867 - 8075942
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaa 115  Q
    |||||||||||  ||| |||| |||||||||||  || |||||| ||||||||| ||||||||||||  |||||||    
T  8075867 tgtttataagtggggataatcttcacctcacaagtcggttttatggagttgtgtcaggtccaaccacgatttttaa 8075942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 3392990 - 3393056
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  ||| ||| |||||||||||| |||||||| | | ||||||||||| ||||||||    
T  3392990 tgtttataagtggggaaaattctcacctcacaagccgattttgtggggttgtgttaggcccaaccac 3393056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 6001513 - 6001435
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaag 116  Q
    |||||||||||||  || |||||||||||||| ||||||||||| ||| ||| |||||   ||||||||  ||||||||    
T  6001513 tatgtttataagtgggggcaatcctcacctcagaaaccgattttgtagggttatgttaaacccaaccacgatttttaag 6001435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 14540817 - 14540759
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggt 98  Q
    |||||||||||||||||||||||| | |||||| || ||||| | || |||||||||||    
T  14540817 tgtttataagtaaggacaatcctctcatcacaagccaattttttggaattgtgttaggt 14540759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 21861537 - 21861603
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || |||||||||||| |||| |||||||| | | ||||||||||| ||||||||    
T  21861537 tgtttataagtgggggcaatcctcaccttacaagccgattttgtggggttgtgttaggcccaaccac 21861603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 25620144 - 25620210
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  25620144 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 25620210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 29469848 - 29469914
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || |||||||||||| |||| ||| |||| | ||||||||||||| ||||||||    
T  29469848 tgtttataagtgggggcaatcctcaccttacaagccggttttgtggagttgtgttaggcccaaccac 29469914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 34027401 - 34027467
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  34027401 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 48243137 - 48243071
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  48243137 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 48243071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 1596838 - 1596903
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||  || |||||||||||| |||| ||| |||| ||| ||||||||||| |||||||||    
T  1596838 tttataagtgggggcaatcctcaccttacaagccggttttgtagggttgtgttaggcccaaccaca 1596903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 31892161 - 31892221
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaa 102  Q
    |||||||||  |||||||||||||||||||| ||| |||| | ||||| ||||||| ||||    
T  31892161 tttataagtggggacaatcctcacctcacaagccggttttgtggagttatgttaggcccaa 31892221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 41191020 - 41191099
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagag-ttgtgttaggtccaaccacagtttttaaga 117  Q
    ||||||||||||| ||  |||||||||| |||||| ||| |||| | ||| ||||||||||||||| |||||||| |||||    
T  41191020 tatgtttataagtgagagcaatcctcacatcacaagccggttttgt-gagattgtgttaggtccaatcacagtttctaaga 41191099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 16962324 - 16962243
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagatt 119  Q
    |||||||||||||  | ||||| |||||||||||||||| |||| | |  |||||||||||||||||||| |||||||||||    
T  16962324 tatgtttataagtgggaacaattctcacctcacaaaccggttttgtgggattgtgttaggtccaaccacaatttttaagatt 16962243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 28069431 - 28069367
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||  || ||||||||||||||||||| |||||| | |||||||||||| |||||||||    
T  28069431 tttataagtgggggcaatcctcacctcacaaactgattttgtggagttgtgttagatccaaccac 28069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 38475755 - 38475822
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||||  || ||||||||||||||||| ||| |||| ||| ||||||||||| |||||||||    
T  38475755 tgtttataagtgggggcaatcctcacctcacaagccggttttgtagggttgtgttaggcccaaccaca 38475822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 4828076 - 4828142
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  4828076 tgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 4828142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 39743537 - 39743603
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| |||||||| | | ||||||||||| ||||||||    
T  39743537 tgtttataagttggggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccac 39743603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 4828301 - 4828368
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| |||||||||    
T  4828301 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccaca 4828368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 5675810 - 5675751
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtc 99  Q
    ||||||||||||  |||||| |||||||||||| | |||||| | |||||||||||||||    
T  5675810 tgtttataagtagagacaattctcacctcacaagctgattttgtggagttgtgttaggtc 5675751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 37001472 - 37001551
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagatt 119  Q
    |||||||||||  ||||||||||||| |||||| ||| |||| | | ||||||||||| ||||||||  ||| |||||||    
T  37001472 tgtttataagtggggacaatcctcacatcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatt 37001551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 19256662 - 19256596
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  19256662 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 19256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 24075382 - 24075316
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  24075382 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 24075316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 37001250 - 37001300
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||||||||| ||| |||| | ||||||||||||| ||||||||    
T  37001250 caatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccac 37001300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 5932025 - 5931948
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||| ||||||| ||||||||  |||||||||    
T  5932025 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttatgttaggcccaaccaccatttttaaga 5931948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 40149079 - 40149014
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    |||||||||||  |||||||||||||||||||| |||||||| | | |||||||||||||||||||    
T  40149079 tgtttataagtggggacaatcctcacctcacaagccgattttgtggggttgtgttaggtccaacca 40149014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 7748239 - 7748316
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    ||||||||||||||||||||| |||  | |||||| ||||||||   ||||||||||||| ||||||| |||||||||    
T  7748239 tgtttataagtaaggacaatcatcattttacaaactgattttatgaggttgtgttaggtcaaaccacaatttttaaga 7748316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 40718283 - 40718218
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    ||||||||||| ||| ||||| ||||||||||||||| |||| | ||||||||||||| |||||||    
T  40718283 tgtttataagtgagggcaatcatcacctcacaaaccggttttgtggagttgtgttaggcccaacca 40718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 19191686 - 19191620
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  19191686 tgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 19191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 28407869 - 28407803
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||||||||||||| ||||||||    
T  28407869 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccac 28407803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 5851756 - 5851692
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttataga-gttgtgttaggtccaacca 105  Q
    |||||||||  |||||||||||||||||||| ||| |||| | || |||||||||||||||||||    
T  5851756 tttataagtggggacaatcctcacctcacaagccggttttgtggaggttgtgttaggtccaacca 5851692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 2324248 - 2324323
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaa 115  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||  |||||||    
T  2324248 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttttaa 2324323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 14927299 - 14927378
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||||  || |||||||||||||| || |||||||| | ||||||| ||||  |||| |||||||| |||||    
T  14927299 tatgtttataagtgggggcaatcctcacctcataagccgattttgtggagttgtattagacccaatcacagtttctaaga 14927378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 16419510 - 16419576
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  16419510 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 16419576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 17719408 - 17719486
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | |||||||| || ||||||||| ||| ||||||    
T  17719408 tgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggttgtgttcggcccaaccacaatttctaagat 17719486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 25082613 - 25082547
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||| || ||||| ||||||||||| ||  |||| | | ||||||||||||||||||||    
T  25082613 tgtttataagtaggggcaatcatcacctcacaagccagttttgtggggttgtgttaggtccaaccac 25082547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 29718336 - 29718402
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||| | | ||||||||||| | ||||||    
T  29718336 tgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcctaaccac 29718402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 31222545 - 31222595
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| || ||||||||||| ||| ||||||||||| ||||||||    
T  31222545 caatcctcaccccataaaccgattttgtagggttgtgttaggaccaaccac 31222595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 36352235 - 36352157
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||| |||||||| || ||| |||| | | |||||||||||| |||||||| ||||||||||    
T  36352235 tgtttataagtgggggcaatcatcacctcaaaagccggttttgtggggttgtgttaggttcaaccacaatttttaagat 36352157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 40379285 - 40379219
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  40379285 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 40379219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 40379520 - 40379454
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  40379520 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 40379454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 17719575 - 17719640
Alignment:
Q  41 gtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||  || ||||||| ||||||||||||| |||| | | ||||||||||| ||||||||    
T  17719575 gtttataagtgggggcaatcctgacctcacaaaccggttttgtggggttgtgttaggcccaaccac 17719640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 33606130 - 33606089
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgatttt 81  Q
    |||||||||||| || ||||||||||||||||||||| ||||    
T  33606130 tgtttataagtaggggcaatcctcacctcacaaaccggtttt 33606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 37246725 - 37246677
Alignment:
Q  58 atcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  37246725 atcctcacctcacaaaccgattttatggaattgtgttaggtccaaccac 37246677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 38791524 - 38791460
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||| ||||||||    
T  38791524 tttataagtgaggacaatcctcacctcacaaatcgattttgtggggttgtgttaggcccaaccac 38791460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 4155567 - 4155633
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  ||||||||||||||||| || ||| |||| ||| ||||||||||| ||||||||    
T  4155567 tgtttataagtggggacaatcctcacctcaaaagccggttttttagggttgtgttaggcccaaccac 4155633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 272490 - 272429
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtcca 101  Q
    ||||||||||| ||||||||| |||||||||||||||||| | | | ||| |||||||||||    
T  272490 tgtttataagtgaggacaatcatcacctcacaaaccgattgtgtggggttatgttaggtcca 272429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 8018976 - 8019056
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagattt 120  Q
    |||||||||||  |  ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||| ||| ||||||||    
T  8018976 tgtttataagtgggtgcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagattt 8019056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 8487588 - 8487522
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||||  |||||||||||||||||||| | | | || | |||||||||||||||||||||||    
T  8487588 tgtttataagtg-ggacaatcctcacctcacaagctggtattctggagttgtgttaggtccaaccaca 8487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 23708300 - 23708222
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagag-ttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||| ||||||||||||||| |||| ||||||||||    
T  23708300 tgtttataagtgggggcaatcctcacctcacaagccggttttgt-gagattgtgttaggtccaatcacaatttttaagat 23708222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 23726756 - 23726678
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagag-ttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||| ||||||||||||||| |||| ||||||||||    
T  23726756 tgtttataagtgggggcaatcctcacctcacaagccggttttgt-gagattgtgttaggtccaatcacaatttttaagat 23726678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 23745212 - 23745134
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagag-ttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||| ||||||||||||||| |||| ||||||||||    
T  23745212 tgtttataagtgggggcaatcctcacctcacaagccggttttgt-gagattgtgttaggtccaatcacaatttttaagat 23745134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 24063737 - 24063659
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagag-ttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||| ||||||||||||||| |||| ||||||||||    
T  24063737 tgtttataagtgggggcaatcctcacctcacaagccggttttgt-gagattgtgttaggtccaatcacaatttttaagat 24063659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 1723152 - 1723086
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  1723152 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 1723086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 11589793 - 11589859
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  11589793 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 11589859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 54368524 - 54368590
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||||| | ||||||||||  ||||||||    
T  54368524 tgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttagacccaaccac 54368590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 6487392 - 6487327
Alignment:
Q  57 aatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagatttat 122  Q
    |||||||||||||||| ||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||    
T  6487392 aatcctcacctcacaagccggttttatggggttgttttaggcccaaccacgatttttaatatttat 6487327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 20327688 - 20327615
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaa 115  Q
    |||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||  |||||||    
T  20327688 tttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttttaa 20327615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 20327925 - 20327860
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| |||||||    
T  20327925 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaacca 20327860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 43781607 - 43781668
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||| ||||||  || |||| ||||||||||||||| ||||||||| ||| |||||    
T  43781607 caatcctcacttcacaagtcggttttgtagagttgtgttaggcccaaccacaatttctaaga 43781668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 20303138 - 20303062
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||  || ||||||||||||||||||||| |||| | |  ||||||||||  |||||||  ||||||||||    
T  20303138 tttataagtgggggcaatcctcacctcacaaaccggttttgtgggattgtgttaggctcaaccacgatttttaagat 20303062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 29215667 - 29215599
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||  || |||||||||  ||| || ||  |||||||||| ||||||||||||||||||    
T  29215667 tatgtttataagtgggggcaatcctcatatcataagccagttttatagagctgtgttaggtccaaccac 29215599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 45828025 - 45828105
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| |   ||||||||||| || |||||| ||| ||||||    
T  45828025 tatgtttataagttggggcaatcctcacctcacaagccggttttgtgaggttgtgttaggccctaccacaatttctaagat 45828105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 27772722 - 27772788
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  27772722 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggtccaaccac 27772788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 6054413 - 6054477
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||  || |||||||||||||||||||||||||| ||| ||||||||||  ||||||||    
T  6054413 tttataagtgggggcaatcctcacctcacaaaccgattttgtagggttgtgttagacccaaccac 6054477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 5648748 - 5648670
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    ||||||||| ||||||||||| ||||||||||| ||| |||| |   ||||||||||||||||||| | ||| ||||||    
T  5648748 tgtttataattaaggacaatcatcacctcacaagccggttttgtgaggttgtgttaggtccaaccataatttctaagat 5648670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 8567034 - 8566969
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||||||| |||| | | ||||||||||| ||||||||    
T  8567034 tgtttataagtg-ggacaatcctcacctcacaaaccggttttgtggggttgtgttaggcccaaccac 8566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 19639189 - 19639123
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||||||| |||  | | | ||||||||||||||||||    
T  19639189 tgtttataagtggggacaatcctcacctcacaaaccggtttagtggggctgtgttaggtccaaccac 19639123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 25065172 - 25065107
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaac 103  Q
    |||||||||||||| || ||||||||||||||||| ||| |||| | | ||||||||||| |||||    
T  25065172 tatgtttataagtaggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaac 25065107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 30711292 - 30711251
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgatttt 81  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  30711292 tgtttataagtagagacaatcctcacctcacaaaccgatttt 30711251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3823312 - 3823372
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtcc 100  Q
    |||||||||||  |||||||| |||| |||||||| |||||||| | ||||||||||||||    
T  3823312 tgtttataagtggggacaatcatcacatcacaaactgattttatggggttgtgttaggtcc 3823372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 30656710 - 30656630
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    ||||||||||||| | |  ||| |||||||||||| ||| ||||  ||| ||||||||| ||||||||| |||||||||||    
T  30656710 tatgtttataagtgaaggtaattctcacctcacaatccggttttggagaattgtgttagatccaaccacggtttttaagat 30656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 33494545 - 33494613
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  33494545 tatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 33494613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 2736243 - 2736177
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  ||||||||||||||||| |||| |||||| |||  |||||||||  ||||||||    
T  2736243 tgtttataagtggggacaatcctcacctcataaacagattttgtaggattgtgttagacccaaccac 2736177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4868653 - 4868587
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  4868653 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 4868587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4868889 - 4868823
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  4868889 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 4868823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 6542769 - 6542719
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||| ||||||||||||||| |||| ||| ||||||||| ||||||||||    
T  6542769 caatcatcacctcacaaaccggttttgtagggttgtgttaagtccaaccac 6542719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 8026397 - 8026463
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  8026397 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 8026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 21690730 - 21690796
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| |||||||| | | |||||||||||  |||||||    
T  21690730 tgtttataagtgggggcaatcctcacctcacaagccgattttgtggggttgtgttaggctcaaccac 21690796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 17147734 - 17147670
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||  || ||||||||||||||||| ||| |||| | | ||| ||||||||||||||||    
T  17147734 tttataagtgggggcaatcctcacctcacaagccggttttgtggggttatgttaggtccaaccac 17147670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 30256819 - 30256886
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  30256819 tatgtttataagtgggg-caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 30256886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 51589814 - 51589880
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| ||| ||||||||||||||||| |||||||| | | ||||||||||| ||||||||    
T  51589814 tgtttataagtgagggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccac 51589880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 52961590 - 52961655
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    ||||||||||| ||| |||||||||||||| || ||| |||||| | |||||||||||||||||||    
T  52961590 tgtttataagtgagggcaatcctcacctcaaaagccggttttatggggttgtgttaggtccaacca 52961655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 51589000 - 51589066
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  51589000 tgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 51589066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 27413369 - 27413421
Alignment:
Q  54 gacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||||||||||| |||||||| |   ||||||||||||||||||||    
T  27413369 gacaatcctcacctcacaagccgattttgtgaggttgtgttaggtccaaccac 27413421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 5953269 - 5953198
Alignment:
Q  43 ttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagttttta 114  Q
    |||||||| |||||||||||| ||||||||  ||||||| ||  |||||||||||  |||||||| ||||||    
T  5953269 ttataagtgaggacaatcctctcctcacaagtcgattttgtaaggttgtgttaggctcaaccacaattttta 5953198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 12245038 - 12244975
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaac 103  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | |||||||||||||||||    
T  12245038 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggtccaac 12244975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 25137379 - 25137312
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||||| || |||||||||||||| || ||| |||| | | ||||||||||| |||||||||    
T  25137379 tgtttataagtatgggcaatcctcacctcataagccggttttgtggggttgtgttaggcccaaccaca 25137312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 31181589 - 31181522
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccaca 107  Q
    |||||||||||  || ||||||||||||||||| | | |||||| | ||||||||||| |||||||||    
T  31181589 tgtttataagtgggggcaatcctcacctcacaagctggttttatggggttgtgttaggcccaaccaca 31181522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 39348428 - 39348365
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaac 103  Q
    |||||||||||  || ||||||||||||||||||||| |||| | | ||||||||||| |||||    
T  39348428 tgtttataagtgggggcaatcctcacctcacaaaccggttttgtggggttgtgttaggcccaac 39348365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4112616 - 4112550
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||| || ||||| ||||||||||| |||||||||| |  ||||||||||  |||||||    
T  4112616 tgtttataagtaggggcaatcatcacctcacaagccgattttatgggattgtgttaggcacaaccac 4112550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4113082 - 4113016
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  4113082 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 4113016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 16162941 - 16163019
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    ||||| |||||  |||||| |||||||||| ||||||||||| | | ||||||||||   |||||||| ||||||||||    
T  16162941 tgtttttaagtggggacaaacctcacctcataaaccgattttgtggggttgtgttagactcaaccacaatttttaagat 16163019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 40079160 - 40079226
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  40079160 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 40079226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 51589234 - 51589300
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||| | | ||||||||||| | ||||||    
T  51589234 tgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcctaaccac 51589300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 26176919 - 26176980
Alignment:
Q  43 ttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacc 104  Q
    |||||||| ||| |||||||||||||| |||||| |||| | | ||||||||||| ||||||    
T  26176919 ttataagtgagggcaatcctcacctcaaaaaccggttttgtggggttgtgttaggcccaacc 26176980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 41035905 - 41035840
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaac 103  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| | |  ||||||||||||||||    
T  41035905 tatgtttataagtgggggcaatcctcacctcacaagccggttttgtgggattgtgttaggtccaac 41035840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 17452753 - 17452689
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  17452753 tttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 17452689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 84716 - 84789
Alignment:
Q  186 atcattttttagacataagtattaataccggtgaaatgcaaattttttgcaaagtaaattttctatacaacaac 259  Q
    ||||||||||||||| | |||||||||||  || |||| ||||| ||||  |||||||||||||||||||||||    
T  84716 atcattttttagacacaggtattaatacccttgtaatgaaaattctttgtgaagtaaattttctatacaacaac 84789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 17015957 - 17015890
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    ||||||||||||| ||| |||| |||||||||||| |||||||| | | ||||||||||| |||||||    
T  17015957 tatgtttataagtgagggcaattctcacctcacaagccgattttgtggggttgtgttaggcccaacca 17015890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 33337316 - 33337237
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||||  || ||||| |||||||||||||||||||| |  || ||||||| ||||||||||  |||||||||    
T  33337316 tatgtttataagtgggggcaatcatcacctcacaaaccgattttgtgaagctgtgttaagtccaaccacgatttttaaga 33337237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 20225049 - 20225115
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||| | |||||||||||||||||||||  ||||||| | | |||||||||||| |||||||    
T  20225049 tgtttataaatgaggacaatcctcacctcacaagtcgattttgtggggttgtgttaggttcaaccac 20225115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 24647720 - 24647770
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  24647720 caatcctcacctcacaagccggttttgtggagttgtgttaggtccaaccac 24647770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 27133069 - 27133003
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  27133069 tgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 27133003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 38976941 - 38977007
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||||||| |||| | ||| |||||||||  |||||||    
T  38976941 tgtttataagttgggacaatcctcacctcacaaaccggttttgtggaggtgtgttaggcacaaccac 38977007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 43117890 - 43117968
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    ||||||||| | ||| ||||||||| ||||||| ||| |||||||| ||||||||||| ||||| ||  ||||||||||    
T  43117890 tgtttataaatgagggcaatcctcatctcacaagccggttttatagggttgtgttaggcccaacaacgatttttaagat 43117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 15438885 - 15438941
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttag 96  Q
    |||||||||||  || ||||||||||||||||| |||||||| ||| ||||||||||    
T  15438885 tgtttataagtgggggcaatcctcacctcacaagccgattttctagggttgtgttag 15438941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 15480583 - 15480645
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||| ||| ||||||    
T  15480583 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagat 15480645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 24346577 - 24346499
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  ||  |||||||||||||||| ||| |||||| | |||||||||||  |||||||| ||| ||||||    
T  24346577 tgtttataagtgggggtaatcctcacctcacaagccggttttatggggttgtgttaggctcaaccacaatttctaagat 24346499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 24531607 - 24531673
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| |||||||| | | ||||||||| | ||||||||    
T  24531607 tgtttataagtgggggcaatcctcacctcacaagccgattttgtggggttgtgttatgcccaaccac 24531673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 29909781 - 29909731
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||||||||| ||| |||| | ||||||||||||| ||||||||    
T  29909781 caatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccac 29909731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 41666833 - 41666767
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  41666833 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 41666767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 41667069 - 41667003
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  41667069 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 41667003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 95342 - 95277
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    |||||||||||  |||||||||||| ||||||| ||| |||| | | ||||||||||| |||||||    
T  95342 tgtttataagtggggacaatcctcatctcacaagccggttttgtggggttgtgttaggcccaacca 95277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 7607602 - 7607667
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    |||||||||||   ||||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  7607602 tgtttataagtggagacaatcttcacctcacaagccggttttgtggagttgtgttaggcccaacca 7607667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 24269930 - 24269869
Alignment:
Q  57 aatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||||||| ||| |||||| | |||||||||||  |||||||| ||| ||||||    
T  24269930 aatcctcacctcacaagccggttttatggggttgtgttaggctcaaccacaatttctaagat 24269869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 24528548 - 24528613
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| |||||||    
T  24528548 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaacca 24528613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 3859384 - 3859352
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaa 72  Q
    ||||||||||| |||||||||||||||||||||    
T  3859384 tgtttataagtgaggacaatcctcacctcacaa 3859352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 20510720 - 20510656
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaa 102  Q
    |||||||||||||  || |||||||||||||| |||||  |||| | ||||||||||||| ||||    
T  20510720 tatgtttataagtgggggcaatcctcacctcaaaaaccagttttgtggagttgtgttaggcccaa 20510656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 25258154 - 25258090
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagattt 120  Q
    ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||  ||| ||||||||    
T  25258154 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagattt 25258090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 25321944 - 25321880
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagattt 120  Q
    ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||  ||| ||||||||    
T  25321944 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagattt 25321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 6282 - 6348
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| |||||||| | | ||||||||||| ||||||||    
T  6282 tgtttataagtgggggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccac 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 9685640 - 9685706
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||||| | ||||||||||| ||||||||    
T  9685640 tgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttaggcccaaccac 9685706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 11036822 - 11036744
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || ||||||||||||||||| |||||| | | | ||||||||||| | ||||||| ||||||||||    
T  11036822 tgtttataagtgggggcaatcctcacctcacaagccgattgtgtggggttgtgttaggcctaaccacaatttttaagat 11036744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 18528293 - 18528227
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||   | |||||||||||||||||| ||||||| ||| |||||||||| |||||||||    
T  18528293 tgtttataagtggcggcaatcctcacctcacaaatcgattttgtagggttgtgttagatccaaccac 18528227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 22231149 - 22231083
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||||||||||||||| ||| |||| | | ||||| ||||||||||||||    
T  22231149 tgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtattaggtccaaccac 22231083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 35788667 - 35788733
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||||| | ||||||||||| ||||||||    
T  35788667 tgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttaggcccaaccac 35788733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 53699033 - 53699091
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttag 96  Q
    |||||||||||||  || |||||||||||||||||||||| ||||| | ||||||||||    
T  53699033 tatgtttataagtgtgggcaatcctcacctcacaaaccgactttatggggttgtgttag 53699091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 53828599 - 53828521
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||  || |||||||||||||| || |||||||| | | ||||||||||| ||||||||| ||| ||||||    
T  53828599 tgtttataagtgggggcaatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaagat 53828521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 53828365 - 53828288
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||  || |||||||||||||| ||||||||||| | | ||||||||||| |||| |||| ||| |||||    
T  53828365 tgtttataagtgggggcaatcctcacctcataaaccgattttgtggggttgtgttaggcccaatcacaatttctaaga 53828288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 16066073 - 16066139
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||||| | |||| |||  |||||||||| ||||||||    
T  16066073 tgtttataagtgggggcaatcctcacctcacaaactggttttgtaggattgtgttaggcccaaccac 16066139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 21498803 - 21498869
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  21498803 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 21498869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 22827546 - 22827612
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  22827546 tgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggttgtgttaggcccaaccac 22827612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 50543627 - 50543577
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    ||||||||||||||||| ||| |||| | ||||||||||||| ||||||||    
T  50543627 caatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccac 50543577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 5398536 - 5398487
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaacca 105  Q
    ||||||||||||||||| ||| |||| | | |||||||||||||||||||    
T  5398536 caatcctcacctcacaagccggttttgtggggttgtgttaggtccaacca 5398487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 27634157 - 27634116
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgatttt 81  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  27634157 tgtttataagtgggggcaatcctcacctcacaaaccgatttt 27634116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 21685023 - 21685083
Alignment:
Q  57 aatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaaga 117  Q
    |||||||||||||||| |||||||| | | ||||||||| | ||||||||| ||| |||||    
T  21685023 aatcctcacctcacaagccgattttgtggggttgtgttaagcccaaccacaatttctaaga 21685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 22231382 - 22231318
Alignment:
Q  42 tttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||  || ||||||||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  22231382 tttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccac 22231318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 5896 - 5961
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaac 103  Q
    ||||||||||||| ||||||||||||||||  ||| |||||||| |   |||||||||||||||||    
T  5896 tatgtttataagtgaggacaatcctcacctttcaagccgattttgttaggttgtgttaggtccaac 5961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 14311 - 14377
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccac 106  Q
    |||||||||||  |||||||| ||||||||||| ||| |||| | | ||||||||||| ||||||||    
T  14311 tgtttataagtggggacaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccac 14377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 12671 - 12733
Alignment:
Q  56 caatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||||||||  ||||||| |   ||||||||||| ||||||||| ||||||||||    
T  12671 caatcctcacctcacaagtcgattttgtgtggttgtgttaggcccaaccacaatttttaagat 12733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 69609 - 69557
Alignment:
Q  40 tgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtg 92  Q
    |||||||||||  || ||||||||||||||||||||| |||||| | ||||||    
T  69609 tgtttataagtgggggcaatcctcacctcacaaaccggttttatggggttgtg 69557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 89631 - 89551
Alignment:
Q  38 tatgtttataagtaaggacaatcctcacctcacaaaccgattttatagagttgtgttaggtccaaccacagtttttaagat 118  Q
    |||||||||||||  |||||||  |||||| ||||  || |||| |   ||||||||||||||||||||| ||||||||||    
T  89631 tatgtttataagtggggacaatattcaccttacaagtcggttttgtgaggttgtgttaggtccaaccacaatttttaagat 89551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University