View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_high_9 (Length: 241)
Name: NF14219_high_9
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 1694421 - 1694618
Alignment:
| Q |
28 |
caataaaatttgtaatgtcatcctgatttgtnnnnnnntcacctagataaaacctctaataaaatttgtaatatcatgctaatttgnnnnnnnnnnnnng |
127 |
Q |
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| T |
1694421 |
caataaaatttgtaatgtcatcctaatttgtaaaaaaatcacctagataaatcctctaataaaatttgtaatgtcatgctaatttgaaaaaagaaaaaag |
1694520 |
T |
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| Q |
128 |
aagtgccataatcagatcagactacagtcacagctggaacatcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagt |
225 |
Q |
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| T |
1694521 |
aagtgccataatcagatcagactacagtcacagctggagcatcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagt |
1694618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 1684034 - 1684197
Alignment:
| Q |
66 |
tcacctagataaaacctctaataaaatttgtaatatcatgctaatttgnnnnnnnnnnnnn-gaagtgccataatcagatcagactacagtcacagctgg |
164 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
1684034 |
tcacctagataaaacctctaataaaatttgtaatgtcatcctaatttgaaaattgaaaaaaagaagtgccataatcagatcagactgcagtcacaactgg |
1684133 |
T |
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| Q |
165 |
aac---atcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagt |
225 |
Q |
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| T |
1684134 |
agctggaccacccttatcatcatcaatctgattatctcccctgcaccagtaatagccatatagt |
1684197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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