View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_low_11 (Length: 238)
Name: NF14219_low_11
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35567198 - 35567419
Alignment:
| Q |
18 |
ttttggatgtatgaatctgaaaaagaaaaagtttatgcaaaagtaactgaggatagcaagataacaaaacaaacattgtgaagaatcaatttaattagtg |
117 |
Q |
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| T |
35567198 |
ttttggacgtatgaatctgaaaaagaaaaagtttatgcaaaactaaatgaggatagcatgataacaaagcaaacattgtgaagaatcaatttaattagtg |
35567297 |
T |
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| Q |
118 |
caacacatcttgattccatagttctgattgtttgttaaaggg-------------gaaatttaattggtactagtagttacacttttaaatgtggttttg |
204 |
Q |
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| T |
35567298 |
caacacatctttattccatagttctgattgtttgttaaagggattgcaactagaagaaatttaattggtactagtagttacacttttaaatgtggttttg |
35567397 |
T |
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| Q |
205 |
gatatgtaacaccgacacttca |
226 |
Q |
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| T |
35567398 |
gatatgtaacaccgacacttca |
35567419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35581926 - 35582146
Alignment:
| Q |
18 |
ttttggatgtatgaatctgaaaaagaaaaagtttatgcaaaagtaactgaggatagcaagataacaaaacaaacattgtgaagaatcaatttaattagtg |
117 |
Q |
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| T |
35581926 |
ttttggacgtatgaatctgaaaa-gaaaaagtttttgcaaaactaaatgaggatagcaagataacaaaacaaacattgtgaagaatcaatttaattagtg |
35582024 |
T |
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| Q |
118 |
caacacatcttgattccatagttctgattgtttgttaaaggg-------------gaaatttaattggtactagtagttacacttttaaatgtggttttg |
204 |
Q |
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| T |
35582025 |
caacacatctttattccatagttctgattgtttgttaaagggattgcaactagaagaaatttaattggtactagtagttacacttttaaatgtggttttg |
35582124 |
T |
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| Q |
205 |
gatatgtaacaccgacacttca |
226 |
Q |
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| T |
35582125 |
gatatgtaacaccgacacttca |
35582146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 35593156 - 35593217
Alignment:
| Q |
49 |
tttatgcaaaagtaactgaggatagcaagataacaaaacaaacattgtgaagaatcaattta |
110 |
Q |
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| T |
35593156 |
tttatgcaaaagtaaatgcatattacaagataacaaaacaaacaatgtgaagaatcaattta |
35593217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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