View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_low_2 (Length: 564)
Name: NF14219_low_2
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 6 - 562
Target Start/End: Complemental strand, 489165 - 488590
Alignment:
| Q |
6 |
aggagcagagaagagacagtccttggttgtgagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
105 |
Q |
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|||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489165 |
aggatcagaaaagagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
489066 |
T |
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| Q |
106 |
tgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
205 |
Q |
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| T |
489065 |
tgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
488966 |
T |
|
| Q |
206 |
aatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgg |
305 |
Q |
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| T |
488965 |
aatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgg |
488866 |
T |
|
| Q |
306 |
gtcagtgcaccagaaatcatcacctgtttttcaatccaaggaaaattcaattaactaaattgtttttatatcatatgttgctagcaaatatt-------- |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
488865 |
gtcagtgcaccagaaatcatcacctgtttttcaatccaaggaaaattcaattaactaaatcatttttatatcatatgttgctagcaaatatttcaaagag |
488766 |
T |
|
| Q |
398 |
-----------tcattcatatatatgtgcaaaaagtatttgtgattgaaataagatgtttttaatgatttgatgattatgaatgattgtcagtataaaaa |
486 |
Q |
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| T |
488765 |
tttagtcacaatcattcatatatatgtgcaaaaagtatttgtgattgaaataagatgtttttaatgatcggatgattatgaatgattgtcagtataaaaa |
488666 |
T |
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| Q |
487 |
tatttacacaaataatgtatttggttcaaattgtgaagtgaatttcttaattagaatctctcagaacaatgcgaaa |
562 |
Q |
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| T |
488665 |
tatttacacaaataatgtatttggttcaaattgcaaagtgaatttcttaattagaatctctcagaacaatgcgaaa |
488590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 130 - 326
Target Start/End: Original strand, 34697039 - 34697235
Alignment:
| Q |
130 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttccca |
229 |
Q |
| |
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| T |
34697039 |
taaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttccca |
34697138 |
T |
|
| Q |
230 |
tccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgggtcagtgcaccagaaatcatc |
326 |
Q |
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| T |
34697139 |
tccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccatttggatcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 43637766 - 43637994
Alignment:
| Q |
103 |
ttgtgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
202 |
Q |
| |
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| T |
43637766 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
43637865 |
T |
|
| Q |
203 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccata |
302 |
Q |
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| T |
43637866 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagc |
43637965 |
T |
|
| Q |
303 |
tgggtcagtgcaccagaaatcatcacctg |
331 |
Q |
| |
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|||||| |||||||| ||||||||||||| |
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| T |
43637966 |
tgggtccgtgcaccaaaaatcatcacctg |
43637994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 5076462 - 5076499
Alignment:
| Q |
437 |
taagatgtttttaatgatttgatgattatgaatgattg |
474 |
Q |
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| T |
5076462 |
taagatgttattaatgatttgatgattatgattgattg |
5076499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 43976035 - 43975962
Alignment:
| Q |
190 |
gattgaaacatatcccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtg |
263 |
Q |
| |
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||||||||||| |||||||| ||||| || | | ||||||||||||||||||||| | |||||| | |||||| |
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| T |
43976035 |
gattgaaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
43975962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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