View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_low_4 (Length: 386)
Name: NF14219_low_4
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 28107342 - 28107698
Alignment:
| Q |
18 |
gaaattacgtattcaaaacatcgaataattcatctctaatatgagtgttataaatggacacataaatgcctttcatctctaattgtgaaacataaattat |
117 |
Q |
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| T |
28107342 |
gaaattacgtattcaaaacatcgagtaattcatctctaatatgagtgttataaatggacacataaatgcctttcatctctaattgtaaaacataaattat |
28107441 |
T |
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| Q |
118 |
tgttcacagccacaaaagaaaatgtttagagtcgattaaatagcttgaaagaagtttgtaacnnnnnnntaaatagcttgaaagaagtcaataaaactaa |
217 |
Q |
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| T |
28107442 |
ggttcacagctacaaaagaaaatgtttagagtcgattaaatagcttgaaagaagtttgtaacaaaaaaataaatagcttgaaagaagtcaataaaactaa |
28107541 |
T |
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| Q |
218 |
aatatttagtattattctctatcgacttttagtttttaaatagaaattgaccagcaaaataataagnnnnnnnaggggaaagattataagaggtaaaatg |
317 |
Q |
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| T |
28107542 |
aatatttagtattattctctatcgacttttagtttttaaatagaaattgaccagcaaaataataagtttctttaggggaaagattataagaggtaaaatg |
28107641 |
T |
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| Q |
318 |
ttgtaaatatgtttcaagatgtttgcaatataattttaaatcctcattgagaataat |
374 |
Q |
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| T |
28107642 |
ttgtaaatatgtttcaagatgtttgcaatataattttaaatcctcattgagaataat |
28107698 |
T |
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