View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14219_low_5 (Length: 314)
Name: NF14219_low_5
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 40120048 - 40120339
Alignment:
| Q |
1 |
aataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgttaattgatttcttggtgtatataatctataattgaatga |
100 |
Q |
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| T |
40120048 |
aataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgttaattgatttcttggtgtatataatctataattgaatga |
40120147 |
T |
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| Q |
101 |
tgtttgaagctttccctagatgtcttacttcatctaatctatattcagtcataaatgttgaatgatgtgcgagtgtggtcaataagatttatataatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40120148 |
tgtttgaagctttccctagatgtcttacttcatc-------tattcagtcataaatgttgaatgatgtgcgagtgtggtcaataagatttatataatctc |
40120240 |
T |
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| Q |
201 |
acggtactccctatttgatgagactcattcttgaataagatttaaatagaaatttattcaatgatnnnnnnnntgtattcatttgcattggatttaatt |
299 |
Q |
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| T |
40120241 |
agggtactccctatttgatgagactcattcttgaataagatttaaatagaaatttattcaatgataaaaaaaatgtattcattttcattggatttaatt |
40120339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40124730 - 40124840
Alignment:
| Q |
1 |
aataaaatagtcaagttcattactagttgtttttaatttttactttatatatgctacttgt--taattgatttcttgg-tgtatataatctataattgaa |
97 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| |||| | | |||||| || ||||||||||||||| ||||||||| ||| ||||||| |
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| T |
40124730 |
aataaaatagtcaagttcattact--ttgttcttaatttctactctct----gctactggtaataattgatttcttgggtgtatataagctacaattgaa |
40124823 |
T |
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| Q |
98 |
tgatgtttgaagctttc |
114 |
Q |
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||||||||| ||||||| |
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| T |
40124824 |
tgatgtttgtagctttc |
40124840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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