View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14219_low_7 (Length: 283)
Name: NF14219_low_7
Description: NF14219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14219_low_7 |
 | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
| [»] scaffold0048 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0185 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 7243 - 7501
Alignment:
| Q |
17 |
aagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7243 |
aagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctt |
7342 |
T |
|
| Q |
117 |
tattagccacagatgacagtgaagaaacaaagctttgcctttccttcgaattggacatcctgcagttacaagacattgtaacagatctaagtggcaaatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7343 |
tattagccacagatgacagtgaagaaacaaagctttgcctttccttcgaattggacatcctgcagttacaagacattgtaacagatctaagtggcaaatc |
7442 |
T |
|
| Q |
217 |
ttaaatcggcgtatgagattgttttagcgcatgaagatgaatccaaaatgttttatctc |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
7443 |
ttaaatcagcgtatgagattgttttagcgcatgaagatgaattcgaaatgttttatctc |
7501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 47982 - 48064
Alignment:
| Q |
17 |
aagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagtaccataatgagcattattttgga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
47982 |
aagatgttgctatatggtccaaagtacatggatgtaaagggtcggtatagaaagtgaagtaccataacgaggattattttgga |
48064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 60619 - 60704
Alignment:
| Q |
61 |
gtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctttattagccacagatgacagtgaagaaacaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
60619 |
gtatagaaagtgaagtaccataatgagcattattttggacttcccgaacaaagctttatgagccacacatgacagtgaaggaacaa |
60704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 85212 - 85154
Alignment:
| Q |
33 |
gtccaaagtacatggatgtaaagggtcggtatagaaagtgaagtaccataatgagcatt |
91 |
Q |
| |
|
|||||||||| |||||||| || |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
85212 |
gtccaaagtatatggatgtgaatggtcattatagaaagtgaagtaccataatgatcatt |
85154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University