View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1421_high_1 (Length: 584)
Name: NF1421_high_1
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 28530805 - 28531375
Alignment:
| Q |
1 |
tagttgagatcaaggggagtatcatataagaaacccgtaatgtttttgtttaatgcttatatatgtatatgaagcattgaagttgcatacatggataagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28530805 |
tagttgagatcaaggggagtatcatataagaaacccgtaatgtttttgtttaatgcttatatatgtatatgaagcattgaagttgcatacatggataatt |
28530904 |
T |
|
| Q |
101 |
tattcttcaaatttgtgaaatagaaattcagttcaattagtcatttttcaaattatgtaccacaattttgaggtttctatgcccgctttgat---gcagc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
28530905 |
tattcttcaaatttgtgaaatagaaattcagttcaattagtcatttttcaaattatgtaccacaattttgaggtttctatgcccgttttgataatgcagc |
28531004 |
T |
|
| Q |
198 |
aagtcaatatattggtttttcattggttttgatatatgtttactatacatacatgtagatggagggactgaattgatcgatgacgtattttaatttacat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531005 |
aagtcaatatattggtttttcattggttttgatatatgtttactatacatccatgtagatggagggactgaattgatcgatgacgtattttaatttacat |
28531104 |
T |
|
| Q |
298 |
gactaatttgctatttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgatttatctgatagtttcacaaaatgtt |
397 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28531105 |
gactaatttgctatttcataaatttgatggactaaattattcgtcgcctacaatttcaaggaccaaaatgctgatttatctgatagttttacaaaatgtt |
28531204 |
T |
|
| Q |
398 |
gaaggaactgtcgttgtttttcctacctaattggataaattgtattataatcttatgatttctgatcttgtagagaacatgattggaaaaggtggtcatg |
497 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531205 |
gaaggaaatgtcgttgtttttcctacctaattggataaattgtattataatcttatgatttctgatcttgtagagaacatgattggaaaaggtggtcatg |
28531304 |
T |
|
| Q |
498 |
cagaagtgtacaaaggacgcttacctgatggaacggttgtagcagtaaagaggctaatgaacaatgagaag |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531305 |
cagaagtgtacaaaggacgcttacctgatggaatggttgtagcagtaaagaggctaatgaacaatgagaag |
28531375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 11567630 - 11567565
Alignment:
| Q |
310 |
atttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgattta |
375 |
Q |
| |
|
|||| |||||||||| |||||||||| || | ||||||||||||||||| |||||||||||||| |
|
|
| T |
11567630 |
attttgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatgctgattta |
11567565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 11567810 - 11567843
Alignment:
| Q |
302 |
aatttgctatttcgtaaatttgatggactaaatt |
335 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
11567810 |
aatttgctatttcgtaaatttgagggactaaatt |
11567843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 558
Target Start/End: Original strand, 13672680 - 13672770
Alignment:
| Q |
468 |
tagagaacatgattggaaaaggtggtcatgcagaagtgtacaaaggacgcttacctgatggaacggttgtagcagtaaagaggctaatgaa |
558 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |||||||||| |||| | ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
13672680 |
tagagaacttgattggaaaaggtggtcatgctgaagtatacaaaggacacttatcagatggtcaagttgtcgcagtaaagagactaatgaa |
13672770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 32810938 - 32810903
Alignment:
| Q |
300 |
ctaatttgctatttcgtaaatttgatggactaaatt |
335 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32810938 |
ctaatttgctatttcgtaaatttgagggactaaatt |
32810903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 34590053 - 34590142
Alignment:
| Q |
286 |
tttaatttacatgactaatttgctatttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgattta |
375 |
Q |
| |
|
||||||||| | |||| ||||| ||||| |||||||| | | ||||||||| | | | |||||||| ||||||||| ||||||||||||| |
|
|
| T |
34590053 |
tttaatttaaaggactgatttgttattttgtaaatttaaggaactaaattacttgactcttacaatatcaaggaccgaaatgctgattta |
34590142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 34618366 - 34618397
Alignment:
| Q |
344 |
cttacaatttcaaggaccaaaatgctgattta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34618366 |
cttacaatttcaaggaccaaaatgctgattta |
34618397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 34745803 - 34745834
Alignment:
| Q |
344 |
cttacaatttcaaggaccaaaatgctgattta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34745803 |
cttacaatttcaaggaccaaaatgctgattta |
34745834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 5086065 - 5086114
Alignment:
| Q |
286 |
tttaatttacatgactaatttgctatttcgtaaatttgatggactaaatt |
335 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
5086065 |
tttaatttaaaggactaatttgctattttgtaaatttgagggactaaatt |
5086114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 40114799 - 40114763
Alignment:
| Q |
477 |
tgattggaaaaggtggtcatgcagaagtgtacaaagg |
513 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
40114799 |
tgattggaaaaggtggttatgctgaagtgtacaaagg |
40114763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University