View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_high_10 (Length: 249)
Name: NF1421_high_10
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16783973 - 16783726
Alignment:
| Q |
1 |
cttttaacggttcgcaagatgtcacatgtccaaatcttgttacaaaacactgtgtctacaaacaaaaatatattaaagcataaagaacaagaagtaag-- |
98 |
Q |
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| T |
16783973 |
cttttaacggtttgcaagatgtcacatgtccaaatcttgttacaaaacactgtgtctacaaacaaaaatatattaaagcataaagaataagaagtaagaa |
16783874 |
T |
|
| Q |
99 |
-----aagttagtttagttctcgacaaaaagaaggga-aaaaagaatgtgattgattgacgtaaacaccatctttccccannnnnnnnctccctctcaac |
192 |
Q |
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||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16783873 |
gtaagaagttagtttagttctcgacaaaaagaagagagaaaaagaacgtgattgattgacgtaaacaccatctttccccattttttttctccctctcaac |
16783774 |
T |
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| Q |
193 |
tcccttatataataatttccaaagcactcttttctcttatattcatct |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783773 |
tcccttatataataatttccaaagcactcttttctcttatattcatct |
16783726 |
T |
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