View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_high_13 (Length: 236)
Name: NF1421_high_13
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 51350594 - 51350775
Alignment:
| Q |
40 |
attgtcaaaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatgtgtcatgtcggtgttcaacacacctgacac |
139 |
Q |
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| T |
51350594 |
attgtcacaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatgtgtcatgtcggtgttcaacacatctgacac |
51350693 |
T |
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| Q |
140 |
acattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactc |
221 |
Q |
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| T |
51350694 |
acattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactc |
51350775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51350533 - 51350572
Alignment:
| Q |
1 |
cagcaccttcaagaacaattacaaaataataagtatatga |
40 |
Q |
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| T |
51350533 |
cagcaccttcaagaacaattacaaaataataagtatatga |
51350572 |
T |
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