View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1421_high_5 (Length: 282)

Name: NF1421_high_5
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1421_high_5
NF1421_high_5
[»] chr5 (15 HSPs)
chr5 (4-266)||(591113-591375)
chr5 (22-195)||(27146845-27147018)
chr5 (55-192)||(23129349-23129485)
chr5 (20-187)||(40872211-40872376)
chr5 (44-192)||(42265431-42265579)
chr5 (18-187)||(13978601-13978769)
chr5 (63-187)||(40458953-40459076)
chr5 (69-169)||(41520685-41520785)
chr5 (44-142)||(8415685-8415783)
chr5 (20-154)||(39046907-39047040)
chr5 (42-111)||(36486904-36486973)
chr5 (62-162)||(1820255-1820356)
chr5 (63-166)||(4377944-4378046)
chr5 (44-111)||(4641494-4641560)
chr5 (44-117)||(27016666-27016739)
[»] chr8 (17 HSPs)
chr8 (19-192)||(33649978-33650151)
chr8 (18-188)||(44254095-44254264)
chr8 (44-154)||(34336474-34336584)
chr8 (49-153)||(15271018-15271122)
chr8 (26-163)||(42704282-42704419)
chr8 (22-187)||(38236225-38236382)
chr8 (37-153)||(9774734-9774851)
chr8 (22-149)||(44042510-44042637)
chr8 (38-127)||(43429678-43429767)
chr8 (22-148)||(39691121-39691247)
chr8 (70-191)||(1876446-1876567)
chr8 (18-77)||(37231416-37231475)
chr8 (41-86)||(36782832-36782877)
chr8 (98-151)||(36907849-36907902)
chr8 (13-88)||(20142506-20142581)
chr8 (156-192)||(33015559-33015595)
chr8 (44-108)||(38167440-38167504)
[»] chr1 (21 HSPs)
chr1 (18-190)||(25670736-25670908)
chr1 (46-194)||(3483037-3483185)
chr1 (22-192)||(698789-698959)
chr1 (18-191)||(43492093-43492266)
chr1 (18-193)||(45925461-45925637)
chr1 (25-188)||(30494034-30494198)
chr1 (22-191)||(28188595-28188763)
chr1 (18-189)||(49003617-49003789)
chr1 (44-192)||(44958270-44958416)
chr1 (62-193)||(31822401-31822532)
chr1 (63-188)||(5224848-5224973)
chr1 (19-111)||(27586141-27586233)
chr1 (22-113)||(11411009-11411100)
chr1 (18-151)||(14758528-14758661)
chr1 (15-113)||(35508356-35508454)
chr1 (42-76)||(11109482-11109516)
chr1 (44-117)||(40203116-40203189)
chr1 (18-115)||(41649855-41649952)
chr1 (42-86)||(5483297-5483341)
chr1 (51-111)||(29523601-29523661)
chr1 (43-111)||(35956382-35956449)
[»] chr7 (16 HSPs)
chr7 (44-192)||(5248596-5248744)
chr7 (69-190)||(26803984-26804105)
chr7 (44-178)||(26402759-26402893)
chr7 (44-182)||(47405203-47405341)
chr7 (18-162)||(17883306-17883450)
chr7 (18-142)||(6387966-6388090)
chr7 (19-187)||(41514259-41514418)
chr7 (19-151)||(33899740-33899872)
chr7 (197-260)||(31699768-31699831)
chr7 (78-123)||(39960413-39960458)
chr7 (43-111)||(17302885-17302953)
chr7 (45-86)||(34742821-34742861)
chr7 (139-187)||(6387645-6387693)
chr7 (41-89)||(25120223-25120271)
chr7 (41-117)||(33887890-33887966)
chr7 (13-88)||(44319922-44319997)
[»] chr6 (10 HSPs)
chr6 (18-199)||(29407972-29408154)
chr6 (44-193)||(24797408-24797557)
chr6 (64-174)||(9975033-9975143)
chr6 (43-142)||(22020534-22020636)
chr6 (65-142)||(22055031-22055108)
chr6 (60-188)||(10345961-10346089)
chr6 (122-166)||(17115193-17115237)
chr6 (44-84)||(34185097-34185137)
chr6 (6-86)||(15588612-15588692)
chr6 (122-154)||(17124687-17124719)
[»] chr2 (14 HSPs)
chr2 (45-169)||(18375058-18375182)
chr2 (44-188)||(27501702-27501846)
chr2 (43-142)||(44330642-44330744)
chr2 (65-142)||(44365416-44365493)
chr2 (42-127)||(32493101-32493185)
chr2 (61-163)||(63897-63996)
chr2 (48-115)||(9153514-9153581)
chr2 (43-115)||(33962983-33963055)
chr2 (69-148)||(13538416-13538495)
chr2 (19-73)||(12133502-12133556)
chr2 (18-76)||(43745593-43745651)
chr2 (43-89)||(44769136-44769182)
chr2 (19-124)||(6761757-6761862)
chr2 (98-150)||(5961968-5962020)
[»] chr4 (35 HSPs)
chr4 (22-188)||(5047177-5047343)
chr4 (18-153)||(28695735-28695870)
chr4 (44-189)||(21988428-21988574)
chr4 (13-187)||(46521468-46521642)
chr4 (67-190)||(30161314-30161435)
chr4 (42-154)||(46088517-46088629)
chr4 (19-171)||(54495449-54495603)
chr4 (22-186)||(24753900-24754065)
chr4 (45-199)||(33266775-33266930)
chr4 (44-161)||(20180217-20180334)
chr4 (18-135)||(49360013-49360130)
chr4 (43-142)||(34124531-34124629)
chr4 (49-163)||(25751693-25751807)
chr4 (71-188)||(5091811-5091926)
chr4 (22-163)||(20787367-20787507)
chr4 (44-193)||(48079239-48079375)
chr4 (22-136)||(20176583-20176697)
chr4 (18-143)||(23135445-23135570)
chr4 (91-188)||(10042888-10042985)
chr4 (19-136)||(41690168-41690287)
chr4 (19-128)||(49587736-49587845)
chr4 (130-192)||(23135377-23135439)
chr4 (22-115)||(40071282-40071375)
chr4 (44-151)||(49011887-49011994)
chr4 (15-69)||(30161460-30161514)
chr4 (44-117)||(53919863-53919936)
chr4 (45-113)||(2818355-2818423)
chr4 (44-140)||(23016237-23016333)
chr4 (132-191)||(39804851-39804909)
chr4 (58-113)||(52014580-52014635)
chr4 (156-197)||(20176535-20176576)
chr4 (66-115)||(39279209-39279258)
chr4 (98-151)||(53261607-53261660)
chr4 (14-86)||(24546777-24546848)
chr4 (145-189)||(41689897-41689941)
[»] chr3 (18 HSPs)
chr3 (19-189)||(11465591-11465761)
chr3 (16-191)||(32734648-32734823)
chr3 (25-191)||(53641638-53641804)
chr3 (44-140)||(52299037-52299133)
chr3 (22-166)||(4275196-4275340)
chr3 (18-170)||(53605623-53605775)
chr3 (33-182)||(30364025-30364173)
chr3 (44-124)||(52380856-52380936)
chr3 (19-113)||(3973783-3973877)
chr3 (19-113)||(4009528-4009622)
chr3 (44-86)||(25299106-25299148)
chr3 (42-128)||(53040462-53040548)
chr3 (18-115)||(31294339-31294436)
chr3 (42-85)||(23554743-23554786)
chr3 (19-113)||(3996000-3996094)
chr3 (47-88)||(47915021-47915062)
chr3 (41-89)||(2831539-2831587)
chr3 (47-115)||(13804888-13804956)
[»] scaffold0018 (3 HSPs)
scaffold0018 (44-142)||(48774-48872)
scaffold0018 (41-86)||(67672-67717)
scaffold0018 (139-187)||(49015-49063)
[»] scaffold0019 (1 HSPs)
scaffold0019 (61-125)||(67446-67510)
[»] scaffold0062 (1 HSPs)
scaffold0062 (44-86)||(2983-3025)
[»] scaffold0027 (1 HSPs)
scaffold0027 (44-194)||(122426-122576)
[»] scaffold0608 (1 HSPs)
scaffold0608 (42-76)||(4919-4953)
[»] scaffold0717 (1 HSPs)
scaffold0717 (45-86)||(5030-5071)
[»] scaffold0633 (1 HSPs)
scaffold0633 (18-115)||(5044-5141)
[»] scaffold0036 (1 HSPs)
scaffold0036 (22-83)||(21274-21335)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 591375 - 591113
Alignment:
Q  4 catatttaattaatggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaattt 103  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  591375 catatttaattaagggtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaattt 591276  T
Q  104 ccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttcccttttaattaattg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  591275 ccaatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagagcacttgttaacatttcccttttaattaattg 591176  T
Q  204 ttaatgacttctttttaggtttatggtgaatggggaaatgtcatttgtaatggtgacaagctt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  591175 ttaatgacttctttttaggtttatggtgaatggggaaatgtcatttgtaatggtgacaagctt 591113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 27146845 - 27147018
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  27146845 ttgttaacgagtcccctaaaggcactctttaaggatttctaataaagaaattattctttaaaaaagttaaaaactctaatttccaatgcattgatttcat 27146944  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctttta 195  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||    
T  27146945 aaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggcatttgttaacatttcactttta 27147018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 23129349 - 23129485
Alignment:
Q  55 gatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttac 154  Q
    |||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23129349 gattcctaataaagaaattattttttaaaaa-gtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttac 23129447  T
Q  155 caaacaatgccctaaaggcacttgttaacatttccctt 192  Q
     |||||||||||||| |||| |||||||||||||||||    
T  23129448 taaacaatgccctaagggcatttgttaacatttccctt 23129485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 40872211 - 40872376
Alignment:
Q  20 tcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttc 119  Q
    |||||||||| ||||| |||| |  |||||||||| | |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  40872211 tcttgttaacgagtgccctaagggtactctttaagaaattctaataaagaaattattctttaaaaaggttaaaaactccaatttccaatgcattgatttc 40872310  T
Q  120 ataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||    
T  40872311 ataaactttgataaaaacttactatttaaagttactaaacaatgccctaaggg--cttgttaacattt 40872376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 42265431 - 42265579
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||| |||||||||||||||    
T  42265431 cactctttaaggattcttaataaaaaaattattctttaaaaaagtcaaaaatttcaattttcaatgcattgatttcataaacttagacaaaaacttacta 42265530  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    | ||||||||| |||||||| ||||| ||||||||||||||||| ||||    
T  42265531 tataaagttactaaacaatgtcctaagggcacttgttaacattttcctt 42265579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 13978769 - 13978601
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||  |||||| |||| |||||||||||| |||||||||||||||  ||||||||||  |||||| ||||||||||||||||||||    
T  13978769 ggtcttgttaacgagtgtcctaaaggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcattgatt 13978670  T
Q  118 tcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    |||||||||||||| ||||||||||||||||| |||  ||||||||  ||||| ||||||||||||||||    
T  13978669 tcataaactttgac-aaaacttactatttaaaattattaaacaatgttctaaatgcacttgttaacattt 13978601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 40458953 - 40459076
Alignment:
Q  63 ataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaat 162  Q
    ||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||     
T  40458953 ataaaaaaattattctttaaaaa-gttaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactctttaaagttattaaacaaa 40459051  T
Q  163 gccctaaaggcacttgttaacattt 187  Q
    ||||||||| | |||||||||||||    
T  40459052 gccctaaagacgcttgttaacattt 40459076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 41520685 - 41520785
Alignment:
Q  69 aaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgcccta 168  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  ||||||||| |||    
T  41520685 aaatcattctttaaaaaagttaaaaactccaatttccaatgcattgattttataaactttgataaaaacttactatttaaagttattaaacaatgctcta 41520784  T
Q  169 a 169  Q
    |    
T  41520785 a 41520785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 8415685 - 8415783
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    ||||||| ||||||| ||||||||| |||||||||||||||| ||  |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8415685 cactcttgaaggattcctaataaaggaattattctttaaaaaggttaaaaacttcaatttccaatacattgatttcataaactttgacaaaaacttact 8415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 39046907 - 39047040
Alignment:
Q  20 tcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttc 119  Q
    |||||||||| |||   |||| |||||||||||||||||  ||||||| ||||||||||||||||| ||  ||||||  ||||| |||||||||||||||    
T  39046907 tcttgttaacgagtatcctaatgacactctttaaggattcttaataaa-aaattattctttaaaaacgttaaaaactttaattttcaatgcattgatttc 39047005  T
Q  120 ataaactttgacaaaaacttactatttaaagttac 154  Q
    ||||||||||| ||||| | |||||||||||||||    
T  39047006 ataaactttgagaaaaattaactatttaaagttac 39047040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 36486904 - 36486973
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||  || ||| |||||| |||||||    
T  36486904 gacactctttaagcatttttaataaagaaattattctttaaaaaagttcaagacttcaattttcaatgca 36486973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 1820255 - 1820356
Alignment:
Q  62 aataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaac-ttactatttaaagttaccaaaca 160  Q
    |||||||||| ||||||||||||| ||  |||| | ||| ||  ||| |||||||| | |||||||| |||||||  ||||||||||||||||| |||||    
T  1820255 aataaagaaaatattctttaaaaaggttaaaaatttcaacttttaatacattgattacgtaaactttaacaaaaaaattactatttaaagttactaaaca 1820354  T
Q  161 at 162  Q
    ||    
T  1820355 at 1820356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 4378046 - 4377944
Alignment:
Q  63 ataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaat 162  Q
    ||||||||||||||  |||||||| |  ||||||  ||||||||||| |||  || |||||||||| ||||||||  ||| ||||| ||||| |||||||    
T  4378046 ataaagaaattatttcttaaaaaaattaaaaactttaatttccaatgtattagttacataaactttaacaaaaacaaact-tttaaggttactaaacaat 4377948  T
Q  163 gccc 166  Q
    ||||    
T  4377947 gccc 4377944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 4641560 - 4641494
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    ||||||||||||||||||||| || |||||||| |||||||||||| || | | | ||||||||||||    
T  4641560 cactctttaaggatttctaatgaataaattatt-tttaaaaaagtcaaagatttcgatttccaatgca 4641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 27016666 - 27016739
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    ||||||||||| ||| | ||  ||||||||||||  |||||||||| |||| | ||||||||||||||| ||||    
T  27016666 cactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgcatcgatt 27016739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 33649978 - 33650151
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgattt 118  Q
    ||||||| ||| ||||| |||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  33649978 gtcttgtcaacgagtgccctaaggacactctttaagaatttctaataaagaaattattcttaaaaaaagtctaaaactctaatttccaatgcattgattt 33650077  T
Q  119 cataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    |||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  33650078 catacattttgacaaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttccctt 33650151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 44254264 - 44254095
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||  |||| | |||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||    
T  44254264 ggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattgatt 44254165  T
Q  118 tcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttc 188  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||| | ||| ||||||||||||||||||    
T  44254164 tcataaattttgacaaaaacttactatttaaagttactaaa-aatgtcttaagggcacttgttaacatttc 44254095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 34336584 - 34336474
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34336584 cactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttacta 34336485  T
Q  144 tttaaagttac 154  Q
    |||||||||||    
T  34336484 tttaaagttac 34336474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 15271018 - 15271122
Alignment:
Q  49 tttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaa 148  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15271018 tttaaggatctctaataaagaaattattctttaaaaaagtcaaaaactcgaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 15271117  T
Q  149 agtta 153  Q
    |||||    
T  15271118 agtta 15271122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 42704282 - 42704419
Alignment:
Q  26 taacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaac 125  Q
    ||||||||| ||||| | ||||||||||  |  | |||||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||     
T  42704282 taacaagtgtactaagggcactctttaaaaaaatttaataaagaaattactcattaaaaaagtcaaaaactccaatctccaatgcattaatttcataaat 42704381  T
Q  126 tttgacaaaaacttactatttaaagttaccaaacaatg 163  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  42704382 tttgacaaaaacttactatttaaagttagtaaacaatg 42704419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 38236382 - 38236225
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||  |||| | ||||||||| |||||  |||||||||||||||| |||||||||||| |||        || |||||||||||||||||    
T  38236382 ttgttaacgagtgttctaagggcactctttacggattcttaataaagaaattattttttaaaaaagtcaaaa--------tttcaatgcattgatttcat 38236291  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    ||| ||||||||||  ||||||||||||||||  ||||||||| |||| || ||||||||| ||||    
T  38236290 aaattttgacaaaattttactatttaaagttattaaacaatgctctaagggaacttgttaatattt 38236225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 9774734 - 9774851
Alignment:
Q  37 ctaaagacactctttaaggatttcta-ataaagaaattattctttaa-aaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaa 134  Q
    ||||| ||||| |||||||||| ||| ||||| |||||||||||| | |||| || ||||||  ||||| ||||||||||||||||||| ||||||||||    
T  9774734 ctaaaaacactttttaaggatt-ctatataaaaaaattattcttttataaaaatcaaaaactataattttcaatgcattgatttcataagctttgacaaa 9774832  T
Q  135 aacttactatttaaagtta 153  Q
    || ||||||||||||||||    
T  9774833 aatttactatttaaagtta 9774851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 44042510 - 44042637
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||| |||| |||||||||||||||||  |||| |||||| ||||| || |||||||  || ||| |||||||||||||||||| | ||     
T  44042510 ttgttaacgagtgccctaaggacactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattgaatgcac 44042609  T
Q  122 aaactttgacaaaaacttactatttaaa 149  Q
    ||| ||  | ||||||||||||||||||    
T  44042610 aaatttctataaaaacttactatttaaa 44042637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 43429678 - 43429767
Alignment:
Q  38 taaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactt 127  Q
    |||||||||||||||| ||||  |||| |||||||||||  ||||||||||| |||||| |||||| |||| |||||||  |||||||||    
T  43429678 taaagacactctttaaagattcttaatgaagaaattatttcttaaaaaagtcaaaaacttcaattttcaatccattgataacataaactt 43429767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||| ||  |||||||||||||| ||| |  || || ||||||||||||||||||||| || | | |||||| ||||||||||| | ||     
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  122 aaactttgacaaaaacttactatttaa 148  Q
    ||| ||| | ||||| |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 1876567 - 1876446
Alignment:
Q  70 aattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaa 169  Q
    ||||||||||| |||| ||| |||  | |||||||||||||| ||||| || ||||||| | ||||| |||| |||||||||    || ||||||||       
T  1876567 aattattcttttaaaatgtcaaaattttcaatttccaatgcactgattacacaaactttcataaaaaattaccatttaaagtccttaaccaatgcccagg 1876468  T
Q  170 aggcacttgttaacatttccct 191  Q
    ||||||| ||||||||||||||    
T  1876467 aggcactagttaacatttccct 1876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37231475 - 37231416
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattc 77  Q
    |||||||||||| ||||| || | | |||||||||| |||||| ||||||||||||||||    
T  37231475 ggtcttgttaacgagtgcccttagggcactctttaaagatttcaaataaagaaattattc 37231416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 36782877 - 36782832
Alignment:
Q  41 agacactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||||||||||||  ||| |||||||| ||||||||||||||||||    
T  36782877 agacactctttaaacattcctaataaataaattattctttaaaaaa 36782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 36907849 - 36907902
Alignment:
Q  98 caatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagt 151  Q
    |||||||||||||| ||||| || ||||||| | ||||| ||||||||||||||    
T  36907849 caatttccaatgcaatgattacacaaacttttataaaaagttactatttaaagt 36907902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 20142581 - 20142506
Alignment:
Q  13 ttaatggtcttgttaacaagtgcactaaagacactctttaagg-atttctaataaagaaattattctttaaaaaagt 88  Q
    |||| |||||||||||| ||||  |||| |||||||||||||| ||||| ||| ||||||||||| ||| |||||||    
T  20142581 ttaagggtcttgttaacgagtgtcctaaggacactctttaaggtatttc-aattaagaaattatttttttaaaaagt 20142506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 33015595 - 33015559
Alignment:
Q  156 aaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  33015595 aaacaatgcccttaaggcacttgttaacattttcctt 33015559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 38167440 - 38167504
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaat 108  Q
    ||||||||||| ||| || || |||||||||||||||||||||    |||||| |||||||||||    
T  38167440 cactctttaagcattacttatgaagaaattattctttaaaaaaaataaaaacttcaatttccaat 38167504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 25670908 - 25670736
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||| ||||   |||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  25670908 ggtcttgttaacgagtgccctaagagcaccttttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatt 25670809  T
Q  118 tcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccc 190  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  25670808 tcataaactttaacaaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttccc 25670736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 3483037 - 3483185
Alignment:
Q  46 ctctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3483037 ctctttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcatcgatttcataaactttgacaaaaacttactatt 3483136  T
Q  146 taaagttaccaaacaatgccctaaaggcacttgttaacatttccctttt 194  Q
    ||||||||| |||||||||||||| || |||||||||||||||| ||||    
T  3483137 taaagttactaaacaatgccctaagggtacttgttaacatttccttttt 3483185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 698959 - 698789
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||| ||||  | ||| ||||||||||| ||||||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  698959 ttgttaacgagtgccctaataatactttttaaggatttttaataaagaaattattcattaaaaaagttaaaaactcaaatttccaatgcattgatttcat 698860  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  698859 aaactttgataaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttccctt 698789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 43492266 - 43492093
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaa-gtcgaaaactccaatttccaatgcattgat 116  Q
    |||||||||||| ||||| |||| | ||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  43492266 ggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaaaagtcaaaaacttcaatttccaatgcattgat 43492167  T
Q  117 ttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccct 191  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||    
T  43492166 ttcataaactttgacaaaaatttactatttaaagttactaagcaatgccct-aaggcacttgttaacatttccct 43492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 45925461 - 45925637
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaa-ttattctttaaaaaagtcgaaaactccaatttccaatgcattgat 116  Q
    |||||||||||| ||||  |||| |||||||||||||||||  ||||||||||| |||||||||||||||||| |||| || |||||||||| |||||||    
T  45925461 ggtcttgttaacgagtgtcctaaggacactctttaaggattcttaataaagaaaattattctttaaaaaagtcaaaaattcaaatttccaatacattgat 45925560  T
Q  117 ttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttcccttt 193  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||   |||   |||| ||||||||||||||||    
T  45925561 ttcataaactttgacaaaaacttactatttaaagttactaaacaatgttttaagaacactcgttaacatttcccttt 45925637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 30494034 - 30494198
Alignment:
Q  25 ttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaa 124  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||  ||||||  |||||||||| ||||||||||||||     
T  30494034 ttaacaagtgctctaaagacactctttaaagatttttaataaagagattattctttaaaaaagtaaaaaactttaatttccaatacattgatttcataat 30494133  T
Q  125 ctttgacaaaaacttactattt-aaagttaccaaacaatgccctaaaggcacttgttaacatttc 188  Q
    |||| ||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||| ||||||    
T  30494134 ctttaacaaaaacttactatttaaaatttactaaacaatgctctaaagacacttgttatcatttc 30494198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 28188595 - 28188763
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| |||||  |||||||||||||||| |||| |||||||| |||   |||||||||||| || |||||| ||||||||||||||||||||||||    
T  28188595 ttgttaacgagtgccataaagacactctttaatgattcctaataaaaaaaaatttctttaaaaaaatcaaaaacttcaatttccaatgcattgatttcat 28188694  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccct 191  Q
    ||| ||| ||||||||||||||||||||||||  |||||||||||||||  |||||||||| ||||||||    
T  28188695 aaa-tttaacaaaaacttactatttaaagttattaaacaatgccctaaaaacacttgttaatatttccct 28188763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 49003617 - 49003789
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattcttta--aaaaagtcgaaaactccaatttccaatgcattga 115  Q
    |||||||||||| ||||| |||| |||||| ||||||||||  ||||||| |||||||| |||   |||||||| ||||||| ||||||||||| ||| |    
T  49003617 ggtcttgttaacgagtgccctaaggacactatttaaggattcataataaaaaaattatttttttttaaaaagtcaaaaactctaatttccaatgtatt-a 49003715  T
Q  116 tttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttcc 189  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||| ||| |||||||||||||||||||    
T  49003716 tttcataaactttgacaaaaatttactatttaaagttattaaacaatgccataagggcacttgttaacatttcc 49003789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 44958416 - 44958270
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||    
T  44958416 cactctttaagaattactaataaa-aaattattctttaaaaa-gtcaaaaactccaattttcaatgcattgatttcataaactttaacaaaaatttacta 44958319  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    ||||||||||| |||||||  |||||   ||||||||||||||||||||    
T  44958318 tttaaagttactaaacaatatcctaagaccacttgttaacatttccctt 44958270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 31822401 - 31822532
Alignment:
Q  62 aataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaa 161  Q
    |||||| |||||||| |||||||||||  |||||||||||||  ||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  31822401 aataaaaaaattattttttaaaaaagttaaaaactccaatttttaatgcattgattttataaactttgacaaaagcttactatctaaagttactaaacaa 31822500  T
Q  162 tgccctaaaggcacttgttaacatttcccttt 193  Q
    || | ||| || |||||||||||||| |||||    
T  31822501 tgtcgtaagggtacttgttaacattttccttt 31822532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 5224973 - 5224848
Alignment:
Q  63 ataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaat 162  Q
    ||||| |||| |||||||||||||||  ||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||  |||||||    
T  5224973 ataaaaaaatcattctttaaaaaagttaaaaactcaaatttgcaatgcattgattttataaactttaacaaaaacttactatttaaaattattaaacaat 5224874  T
Q  163 gccctaaaggcacttgttaacatttc 188  Q
     |||||| | || |||||||| ||||    
T  5224873 accctaaggacatttgttaacgtttc 5224848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 27586233 - 27586141
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    ||||||||||  ||| || | ||||||||||||||| |||| |||| || ||||||||||||||||||    |||||| ||||||||||||||    
T  27586233 gtcttgttaaagagtacatttaagacactctttaagtatttttaatgaataaattattctttaaaaaaaattaaaacttcaatttccaatgca 27586141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 11411100 - 11411009
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    |||||||| ||||  |||| |||||||||||||||||||| || |||||||||||| || |||||||  || |||  |||||||||| ||||    
T  11411100 ttgttaacgagtgtcctaaggacactctttaaggatttctcattaagaaattattcattgaaaaagttcaatactttaatttccaatacatt 11411009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 14758528 - 14758661
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||  |||| | |||||||||| | |||| ||| |||||||||||| ||||||||||  || | | |||||| | ||||||||| |    
T  14758528 ggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattgaat 14758627  T
Q  118 tcataaactttgacaaaaacttactatttaaagt 151  Q
     || ||  ||| | ||||| ||||||||||||||    
T  14758628 gcacaatttttcataaaaatttactatttaaagt 14758661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 35508356 - 35508454
Alignment:
Q  15 aatggtcttgttaacaagtgcactaaagacactctttaaggatttct-aataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    |||| |||||||||| ||||| || | ||||||||||| || ||||| ||| ||||||||||||||| ||||| |  || ||| ||||||||||||||||    
T  35508356 aatgatcttgttaacgagtgccctgatgacactctttatgg-tttctcaattaagaaattattctttgaaaaaatttaacacttcaatttccaatgcatt 35508454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 11109482 - 11109516
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattatt 76  Q
    ||||||||||||||||||| |||||||||||||||    
T  11109482 gacactctttaaggatttcaaataaagaaattatt 11109516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 40203189 - 40203116
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    ||||||||||||||| | ||  |||||||||||   |||||||||| || | | ||||||||||||||||||||    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgatt 40203116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 41649855 - 41649952
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    ||||||||||||||||||  |||  ||||| ||||||| || | ||| || ||||||||| ||||||||||  || | | |||||||| |||||||||    
T  41649855 ggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattga 41649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 5483297 - 5483341
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||| |||||||| |||| |||| |||||||||||||||||||||    
T  5483297 gacattctttaagaatttataatgaagaaattattctttaaaaaa 5483341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 29523661 - 29523601
Alignment:
Q  51 taaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    |||| ||| ||||||||||||| ||| ||||||||||   |||||| ||||||||||||||    
T  29523661 taagcattcctaataaagaaataattttttaaaaaaggtaaaaacttcaatttccaatgca 29523601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 35956449 - 35956382
Alignment:
Q  43 acactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    |||||||||||  |||| |||||||||||||||| || ||||||||  |||||| ||||||| ||||||    
T  35956449 acactctttaaacatttttaataaagaaattatttttaaaaaaagt-aaaaacttcaatttctaatgca 35956382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 5248744 - 5248596
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5248744 cactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 5248645  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    ||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  5248644 tttaaagttactaaacaatgccctaagggcacttgttaatattttcctt 5248596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 26804105 - 26803984
Alignment:
Q  69 aaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgcccta 168  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26804105 aaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgattttataaactttgacaaaaacttactatttaaagttattaaacaatgcccta 26804006  T
Q  169 aaggcacttgttaacatttccc 190  Q
    | ||||||||||||||||||||    
T  26804005 agggcacttgttaacatttccc 26803984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 26402893 - 26402759
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||||||    
T  26402893 cactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaacttcaattttcaatacattgatttcataaattttgacaaaaacttacta 26402794  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttg 178  Q
    ||||||||||| |||||||||| ||| ||||||||    
T  26402793 tttaaagttactaaacaatgccttaagggcacttg 26402759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 47405341 - 47405203
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  47405341 cactctttaaggattcctaataaataaattattcattaaaaaggtcaaaaacttcaatttctaatgcattgatttcataaactttgacaaaaacttacta 47405242  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaa 182  Q
    ||||||||||| |||||||| ||| | | ||||||||||    
T  47405241 tttaaagttactaaacaatgtcctgaggccacttgttaa 47405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 17883450 - 17883306
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    ||||| |||||| ||||  |||| | |||||||||||||||| |||||||||||||||| |||||||||||| ||||||  ||||||||| |||||||||    
T  17883450 ggtctagttaacgagtgtcctaagggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcattgatt 17883351  T
Q  118 tcataaactttgacaaaaacttactatttaaagttaccaaacaat 162  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  17883350 tcataaattttgacaaaaacttactatttaaagttactaaacaat 17883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 6388090 - 6387966
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    ||||||||||||||||||  | |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||    
T  6388090 ggtcttgttaacaagtgcctttaagacactctttaaggattcataataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatacattaatt 6387991  T
Q  118 tcataaactttgacaaaaacttact 142  Q
    | ||||| ||| ||||| |||||||    
T  6387990 ttataaattttaacaaatacttact 6387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 41514418 - 41514259
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgattt 118  Q
    ||||||||||||||||   ||| ||||||| |||| ||||| |||||||||||||||||||||||||  |          ||||| |||| |||||||||    
T  41514418 gtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaatttt---------aattttcaatacattgattt 41514328  T
Q  119 cataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  41514327 cataaactttgactaaaacttactatttaaagttactaaacaatgtcctaaaagcacttgttaacattt 41514259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 33899872 - 33899740
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgattt 118  Q
    ||||||||||| |||| | ||| | |||||||||| |||| |||||||||||||||||| |||||||| ||  ||| | |||||| ||||| ||||||||    
T  33899872 gtcttgttaacgagtgtagtaagggcactctttaaagattcctaataaagaaattattccttaaaaaaatcacaaatttcaattttcaatgtattgattt 33899773  T
Q  119 cataaactttgacaaaaacttactatttaaagt 151  Q
    |||||| ||| ||||||||||| ||||||||||    
T  33899772 cataaattttaacaaaaacttaatatttaaagt 33899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 31699768 - 31699831
Alignment:
Q  197 ttaattgttaatgacttctttttaggtttatggtgaatggggaaatgtcatttgtaatggtgac 260  Q
    |||||||||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||    
T  31699768 ttaattgttaatgacttctttttaggtttatgataaattgggagatgtcatttgtcatggtgac 31699831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 39960458 - 39960413
Alignment:
Q  78 tttaaaaaagtcgaaaactccaatttccaatgcattgatttcataa 123  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  39960458 tttaaaaaagttaaaaactccaatttccaatgcattgatttcataa 39960413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 17302885 - 17302953
Alignment:
Q  43 acactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgca 111  Q
    |||||||||||| ||| ||||||||||||||||| ||| |||||   | ||||| ||||||||||||||    
T  17302885 acactctttaagcattcctaataaagaaattattattttaaaaaaaagtaaacttcaatttccaatgca 17302953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 34742861 - 34742821
Alignment:
Q  45 actctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  34742861 actctttaaggatttttaataaagaaattatt-tttaaaaaa 34742821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 6387693 - 6387645
Alignment:
Q  139 tactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    |||||||||||||||| ||||||| |||||| | || ||||||||||||    
T  6387693 tactatttaaagttactaaacaataccctaacgacatttgttaacattt 6387645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 25120271 - 25120223
Alignment:
Q  41 agacactctttaaggatttctaataaagaaattattctttaaaaaagtc 89  Q
    ||||||||||||| |||||| ||| || |||||||| ||||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtc 25120223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 33887966 - 33887890
Alignment:
Q  41 agacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||||| ||| | ||  ||  |||||||||||||||||||| || | | |||||| |||||||||||||    
T  33887966 agacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgatt 33887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 44319997 - 44319922
Alignment:
Q  13 ttaatggtcttgttaacaagtgcactaaagacactctttaagg-atttctaataaagaaattattctttaaaaaagt 88  Q
    |||| |||||||||||| ||||  |||| |||||||||||||| ||||| ||| ||||||||||| ||| |||||||    
T  44319997 ttaagggtcttgttaacgagtgtcctaaggacactctttaaggtatttc-aattaagaaattatttttttaaaaagt 44319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 29407972 - 29408154
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| |||||  ||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  29407972 ggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaatttctaatgcattgatt 29408071  T
Q  118 tcataaactttgacaaaaacttactatttaaagttacc-aaacaatgccctaaaggcacttgttaacatttcccttttaatta 199  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||| | | || |||||||||||||||||||| || |||||    
T  29408072 tcataaattttgacaaaaacttactatttaaagttccctaaacaatactccaagggcacttgttaacatttcccattaaatta 29408154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 24797408 - 24797557
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  24797408 cactctttaatgattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgtattgatttcataaactttgacaaaaacttacta 24797507  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttcccttt 193  Q
    ||||||||||| |||||||| ||||| |||||||||||| ||||| ||||    
T  24797508 tttaaagttactaaacaatgtcctaagggcacttgttaatatttctcttt 24797557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 9975143 - 9975033
Alignment:
Q  64 taaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatg 163  Q
    ||||||||||||||||||||||| |  ||||||| |||||| |||  |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  9975143 taaagaaattattctttaaaaaaataaaaaactcaaatttctaatatattgatttcataaactttaacaaaaatttactatttaaagttactaaacaatg 9975044  T
Q  164 ccctaaaggca 174  Q
    |||||||||||    
T  9975043 ccctaaaggca 9975033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 22020636 - 22020534
Alignment:
Q  43 acactctttaaggatttctaataaa---gaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaactt 139  Q
    ||||||||||||||||  |||||||   ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22020636 acactctttaaggattattaataaaaaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactt 22020537  T
Q  140 act 142  Q
    |||    
T  22020536 act 22020534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 22055108 - 22055031
Alignment:
Q  65 aaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  22055108 aaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaacttact 22055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 10346089 - 10345961
Alignment:
Q  60 ctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaac 159  Q
    |||||||  |||||||| |||||||||||  |||||| |||||| ||||||||||||| |||||| | | ||||||| |||||| ||||  |||| ||||    
T  10346089 ctaataacaaaattattttttaaaaaagttaaaaacttcaattttcaatgcattgattacataaattctaacaaaaatttactaattaagattactaaac 10345990  T
Q  160 aatgccctaaaggcacttgttaacatttc 188  Q
    |||||||||| | ||||||||| ||||||    
T  10345989 aatgccctaaggacacttgttagcatttc 10345961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 17115193 - 17115237
Alignment:
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccc 166  Q
    ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  17115193 aaactttaacaaaaacttactatttaatgttactaaacaatgccc 17115237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 34185137 - 34185097
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaa 84  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  34185137 cactctttaagcattcctaataaagaaattattctttaaaa 34185097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 15588612 - 15588692
Alignment:
Q  6 tatttaattaatggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    ||||||||||| ||||||||||||||||||     ||||| ||||||||||| || |||  | ||| ||||||||||||||    
T  15588612 tatttaattaagggtcttgttaacaagtgcttccgagacattctttaaggatatcaaatttataaaatattctttaaaaaa 15588692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 17124687 - 17124719
Alignment:
Q  122 aaactttgacaaaaacttactatttaaagttac 154  Q
    ||||||| |||||||||||||||||||||||||    
T  17124687 aaactttaacaaaaacttactatttaaagttac 17124719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 18375058 - 18375182
Alignment:
Q  45 actctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactat 144  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18375058 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttgacaaaaacttactat 18375157  T
Q  145 ttaaagttaccaaacaatgccctaa 169  Q
    ||||||| || |||||||| |||||    
T  18375158 ttaaagtcactaaacaatgtcctaa 18375182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 27501846 - 27501702
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||| |||| |||||||||||||||| ||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  27501846 cactctttaagaatttttaataaagaaattatttttttaaaaagtcaaaaacttcaatttccaatgcattaatttcataaactttgacaaaaacttacta 27501747  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttc 188  Q
    ||||||||||| |||||||| | ||| |||| |||||||||||||    
T  27501746 tttaaagttactaaacaatgtcttaagggcatttgttaacatttc 27501702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 44330744 - 44330642
Alignment:
Q  43 acactctttaaggatttctaataaa---gaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaactt 139  Q
    ||||||||||||||||  |||||||   ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  44330744 acactctttaaggattattaataaaaaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactt 44330645  T
Q  140 act 142  Q
    |||    
T  44330644 act 44330642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 44365493 - 44365416
Alignment:
Q  65 aaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  44365493 aaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaacttact 44365416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 32493185 - 32493101
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactt 127  Q
    |||||||||||||||||  ||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  32493185 gacactctttaaggattcttaataaa-aaattattcttcaaaaaagtcaaaaactccaatttccattgcattgatttcataaactt 32493101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 63897 - 63996
Alignment:
Q  61 taataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaaca 160  Q
    ||||||||||||||||||||||||||||| |||| |  |||||  ||| |||| |||||||||| ||||||||||||||||||   |||||||| |||||    
T  63897 taataaagaaattattctttaaaaaagtcaaaaattttaatttttaatacattaatttcataaattttgacaaaaacttacta---aaagttactaaaca 63993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 9153581 - 9153514
Alignment:
Q  48 ctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    ||||||||||| | ||| |||||||||||||||||||||| | || ||| ||||||||||||||||||    
T  9153581 ctttaaggattccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattga 9153514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 33963055 - 33962983
Alignment:
Q  43 acactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    ||||||||||| | |||| ||| |||||||||||||||||||||||  || ||| |||||| |||||||||||    
T  33963055 acactctttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattga 33962983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 13538416 - 13538495
Alignment:
Q  69 aaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaa 148  Q
    |||||||||||||||||| || || | | |||||||||||||||||| | |||||  ||| | ||||| |||||||||||    
T  13538416 aaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataaaaagttactatttaa 13538495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 12133502 - 12133556
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaatt 73  Q
    ||||||||||||||||| || | ||||||||||||||||| | || |||||||||    
T  12133502 gtcttgttaacaagtgcccttaggacactctttaaggattccaaaaaaagaaatt 12133556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 43745593 - 43745651
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattatt 76  Q
    |||||||||||| ||||| || | | ||||||||||||||| | |||||||||||||||    
T  43745593 ggtcttgttaacgagtgcccttagggcactctttaaggattccaaataaagaaattatt 43745651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 44769182 - 44769136
Alignment:
Q  43 acactctttaaggatttctaataaagaaattattctttaaaaaagtc 89  Q
    ||||||||||||||||  ||||||| ||||||| |||||||||||||    
T  44769182 acactctttaaggattcttaataaaaaaattatgctttaaaaaagtc 44769136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 6761862 - 6761757
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgattt 118  Q
    |||||||||||||||||     || ||||||||||| ||| | ||  || |||| ||||| |||||||||| || | | ||||||||||||||||||||     
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  119 cataaa 124  Q
    ||||||    
T  6761762 cataaa 6761757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 5962020 - 5961968
Alignment:
Q  98 caatttccaatgcattgatttcataaactttgacaaaaacttactatttaaag 150  Q
    |||||||||||||||||||| |||||| ||| | ||| | |||||||||||||    
T  5962020 caatttccaatgcattgattacataaattttcaaaaacagttactatttaaag 5961968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 5047177 - 5047343
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||| |||| | ||||| |||||||||||||||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||||||    
T  5047177 ttgttaacgagtgccctaagggcactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaatgcattgatttcat 5047276  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttc 188  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||||    
T  5047277 aaactttaaaaaaaacttactatttaaagttactaaacaataccctaagaacacttgttaacatttc 5047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 28695735 - 28695870
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||| |||| | ||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| ||| |||    
T  28695735 ggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatgtattaatt 28695834  T
Q  118 tcataaactttgacaaaaacttactatttaaagtta 153  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28695835 tcataaactttgacaaaaatttactatttaaagtta 28695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 21988574 - 21988428
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaattt-ccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  21988574 cactctttaaagattcataataaagaaattattctttaaaaaagtcaaaaactccaattttccaatgtattgatttcataaactttgacaaaaacttact 21988475  T
Q  143 atttaaagttaccaaacaatgccctaaaggcacttgttaacatttcc 189  Q
    |||||||||||  |||||||| |||||   ||||| |||||||||||    
T  21988474 atttaaagttattaaacaatgtcctaagaacacttattaacatttcc 21988428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 46521468 - 46521642
Alignment:
Q  13 ttaatggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcat 112  Q
    |||| |||||||||||| ||||| || |   ||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||  |||||||    
T  46521468 ttaagggtcttgttaacgagtgcccttagagcactctttaaggattcctaataaataaattattctttaaaaaagttaaaaactccaatttttaatgcat 46521567  T
Q  113 tgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    |||||||||||||||| ||||||| ||| |||||||||| || |||||||| | |||| ||||||||||||||||    
T  46521568 tgatttcataaactttaacaaaaatttattatttaaagtcactaaacaatgtcttaaaagcacttgttaacattt 46521642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 30161435 - 30161314
Alignment:
Q  67 agaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccc 166  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  30161435 agaaattattctttaaaaaagtcaaaaactccaatttacaatgcattgatttcataaactttaacaaaaacttactatttaaagtta--aaacaatgccc 30161338  T
Q  167 taaaggcacttgttaacatttccc 190  Q
    |||  ||| |||||||||||||||    
T  30161337 taatagcatttgttaacatttccc 30161314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 46088629 - 46088517
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttac 141  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46088629 gacactctttaagaattcctaataaagaaattattccttaaaaaaatcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttac 46088530  T
Q  142 tatttaaagttac 154  Q
    |||||||||||||    
T  46088529 tatttaaagttac 46088517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 54495449 - 54495603
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttct--aataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgat 116  Q
    ||||||||||| ||||| |||| |  | ||||||| ||||| |  ||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||    
T  54495449 gtcttgttaacgagtgctctaaggctattctttaaagatttttttaataaagaaattattttttaaaaaagttaaaaactccaattttcaatgcattgat 54495548  T
Q  117 ttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaag 171  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  54495549 ttcataaactttgataaaaacttactatttaaagttactaaacaatgccctaaag 54495603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 24753900 - 24754065
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaa-ctccaatttccaatgcattgatttca 120  Q
    |||||||||||||| |||| | ||||||||||  |||||||||||||||||||||| ||||||||||  |||| ||  ||||||||||||||||||||||    
T  24753900 ttgttaacaagtgctctaatggcactctttaaaaatttctaataaagaaattattccttaaaaaagtaaaaaaactttaatttccaatgcattgatttca 24753999  T
Q  121 taaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatt 186  Q
    |||||||| | ||||| ||||||||||||||| | |||||||||||||| |||| || ||||||||    
T  24754000 taaactttcataaaaatttactatttaaagtttctaaacaatgccctaagggcagtttttaacatt 24754065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 33266930 - 33266775
Alignment:
Q  45 actctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaa-aacttacta 143  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||| | ||| |||||||||    
T  33266930 actctttaaagatttttaataaagaaattattctttaaaaaagtcaaaaactttaatttccaatggattgatttcataaacttttaaaaataacttacta 33266831  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttcccttttaatta 199  Q
    ||||||||||| ||| |||  ||||| || |||| |||||||||||||| ||||||    
T  33266830 tttaaagttactaaataatatcctaagggtacttcttaacatttcccttataatta 33266775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 20180334 - 20180217
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    ||||||||||| |||  ||||||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  20180334 cactctttaagaattcttaataaataaattattatttaaaaaagtcaaaaactccaattttcaatgcattaatttcataaactttgacaaaaatttacta 20180235  T
Q  144 tttaaagttaccaaacaa 161  Q
    ||||||||| | ||||||    
T  20180234 tttaaagttcctaaacaa 20180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 49360013 - 49360130
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||| ||||  ||||| |||||| |||  || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  49360013 ggtcttgttaacgagtgccctaagaacactttttaagaattcatagtaaagaaaatattctttaaaaaagtcaaaaactccaatttccaatgcattgatt 49360112  T
Q  118 tcataaactttgacaaaa 135  Q
    ||||| ||||||||||||    
T  49360113 tcatacactttgacaaaa 49360130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 34124629 - 34124531
Alignment:
Q  43 acactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||| |||||    
T  34124629 acactttttaaggatttctaataaagaaattattttttaaaaaagtc-aaaattacaattttcaatgcattgatttcataaactttgacaaaaatttact 34124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 25751807 - 25751693
Alignment:
Q  49 tttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |  ||||| ||||||||| ||| ||||| |||| | |||||||||||||||||    
T  25751807 tttaaggatttctaataaagaaattattctttaaaaaagtcaaaaaatttaattttcaatgcattaattgcataagctttaataaaaacttactatttaa 25751708  T
Q  149 agttaccaaacaatg 163  Q
    |||||  ||||||||    
T  25751707 agttattaaacaatg 25751693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 5091926 - 5091811
Alignment:
Q  71 attattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaa 170  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||| |||||| ||| ||||||| ||| ||||||||||||| |||||||||||||||    
T  5091926 attattctttaaaaaagtcaaaaacttcaattttcaatgcattgatt-cataaaatttaacaaaaatttattatttaaagttactaaacaatgccctaaa 5091828  T
Q  171 ggcacttgttaacatttc 188  Q
     |||||||||||| ||||    
T  5091827 -gcacttgttaacttttc 5091811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 20787367 - 20787507
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||  |||||| |||||||||||||||| ||||||| |||||||| |||||||| ||| |||||| |||||| |||| ||||||||||||    
T  20787367 ttgttaacgagtgtcctaaaggcactctttaaggatttttaataaaaaaattattttttaaaaa-gtcaaaaacttcaattttcaatacattgatttcat 20787465  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatg 163  Q
    ||||||||||||||  |||| ||||||| | || ||||||||    
T  20787466 aaactttgacaaaattttaccatttaaaatcactaaacaatg 20787507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 48079375 - 48079239
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    |||||||||||||||  |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||            ||||||||    
T  48079375 cactctttaaggattcataataaagaaattattctttaaaaaatta-aaaactccaatttccaatgcattgatttcataa------------acttacta 48079289  T
Q  144 tttaaagttaccaaacaatgccctaaaggcacttgttaacatttcccttt 193  Q
    ||||||||||| |||||||||||| |  |||||||||||||||| |||||    
T  48079288 tttaaagttactaaacaatgcccttatagcacttgttaacattttccttt 48079239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 20176697 - 20176583
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    |||||||| ||||| |||| | ||||| |||||||||  ||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||    
T  20176697 ttgttaaccagtgccctaagggcactccttaaggattcataataaagaaattattccttaaaaaattcaaaaactccaattttcaatgcattgatttcat 20176598  T
Q  122 aaactttgacaaaaa 136  Q
     |||||||| |||||    
T  20176597 gaactttgagaaaaa 20176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 23135570 - 23135445
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||||  ||||   |||||||||||||||||||||||| ||||||||| |||||||| |  | ||||| ||||||| ||||||| |||    
T  23135570 ggtcttgttaacgagtgtcctaagtgcactctttaaggatttctaataaaaaaattattccttaaaaaaataaataactcaaatttccgatgcattaatt 23135471  T
Q  118 tcataaactttgacaaaaacttacta 143  Q
    ||||||||||| ||||||||||||||    
T  23135470 tcataaactttaacaaaaacttacta 23135445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 10042888 - 10042985
Alignment:
Q  91 aaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttc 188  Q
    |||||| |||| | |||||||||||||||||||| ||| | ||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||    
T  10042888 aaaacttcaatgttcaatgcattgatttcataaattttaataaaaacttactatttaaagttattaaacaatgctttaaaggcacttgttaacatttc 10042985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 41690287 - 41690168
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaag-tcgaaaactcc-aatttccaatgcattgat 116  Q
    ||||||||||  ||||| |||||  |||| |||||||||| |||||||||||||||||||||||||||  || |||| | | ||||||||||||||||||    
T  41690287 gtcttgttaatgagtgcgctaaaagcactttttaaggattcctaataaagaaattattctttaaaaaaaatcaaaaaattctaatttccaatgcattgat 41690188  T
Q  117 ttcataaactttgacaaaaa 136  Q
    || ||||||||||| |||||    
T  41690187 tttataaactttgataaaaa 41690168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 49587736 - 49587845
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaatt-attctttaaaaaa-gtcgaaaactccaatttccaatgcattgat 116  Q
    ||||||||||||||||| || | | ||||||| ||||||| |||||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||    
T  49587736 gtcttgttaacaagtgc-ctgagggcactctt-aaggattcctaataaagaaatttattctttaaaaaaagtcaaaaactctaattttcaatgcattgat 49587833  T
Q  117 ttcataaacttt 128  Q
    ||||||||||||    
T  49587834 ttcataaacttt 49587845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 23135439 - 23135377
Alignment:
Q  130 acaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctt 192  Q
    ||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||||    
T  23135439 acaaaaacttactatttaaagttactaaacaatgttctaagggcacttgttaacatttccctt 23135377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 40071282 - 40071375
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    |||||||  ||||| |||| ||||||||||||||||||||||| |||||||||| | || |||||||| || ||| |||||||||| |||||||    
T  40071282 ttgttaatgagtgctctaatgacactctttaaggatttctaattaagaaattatgcattgaaaaagtccaatacttcaatttccaacgcattga 40071375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 49011994 - 49011887
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttacta 143  Q
    |||||||||||||||| |||| |||||  ||||| ||||||||||  || ||| |||||| | ||||||| | | || ||  ||| ||||||||||||||    
T  49011994 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcacaaaaacttacta 49011895  T
Q  144 tttaaagt 151  Q
    ||||||||    
T  49011894 tttaaagt 49011887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 30161514 - 30161460
Alignment:
Q  15 aatggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaaga 69  Q
    ||||||||||||||| ||||  |||| || |||||||||||||||||||||||||    
T  30161514 aatggtcttgttaacgagtgtcctaaggatactctttaaggatttctaataaaga 30161460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    ||||||||||| ||||| ||  || |||||||||| |||||||||| |||| | |||||||| |||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 2818355 - 2818423
Alignment:
Q  45 actctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    |||||||||| ||||  ||| ||||||||||||||| |||| ||| |||| | ||||||||||||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatt 2818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 23016333 - 23016237
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 140  Q
    |||||||| || ||| | ||| ||||||||||| |||||| ||||| || | | |||||||||||||||||| | |||| ||||| | |||||||||    
T  23016333 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 23016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 39804909 - 39804851
Alignment:
Q  132 aaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccct 191  Q
    ||||| |||||||||||||||   ||| ||||||||||| ||||||||||||||||||||    
T  39804909 aaaaatttactatttaaagtttt-aaagaatgccctaaaagcacttgttaacatttccct 39804851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 52014580 - 52014635
Alignment:
Q  58 ttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    ||||||| | |||||||||| ||||||||||| || | ||||||||||||||||||    
T  52014580 ttctaattaggaaattattcattaaaaaagtcaaataatccaatttccaatgcatt 52014635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 20176576 - 20176535
Alignment:
Q  156 aaacaatgccctaaaggcacttgttaacatttcccttttaat 197  Q
    |||||||||||||| ||||||||||||||||| |||| ||||    
T  20176576 aaacaatgccctaagggcacttgttaacattttccttctaat 20176535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 39279209 - 39279258
Alignment:
Q  66 aagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    |||||||||||| ||||||||||| ||  || ||||||||||||||||||    
T  39279209 aagaaattattccttaaaaaagtcaaattcttcaatttccaatgcattga 39279258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 53261607 - 53261660
Alignment:
Q  98 caatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagt 151  Q
    |||||||||||||| ||||| || ||||||| | ||||| ||||||||||||||    
T  53261607 caatttccaatgcagtgattacacaaacttttataaaaagttactatttaaagt 53261660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 24546848 - 24546777
Alignment:
Q  14 taatggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||||||||||||||| ||||| ||| | |||||||||||| || |  ||| | |||||||||||||||||||    
T  24546848 taatggtcttgttaacgagtgctctaga-acactctttaagcatgttaaattaggaaattattctttaaaaaa 24546777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 41689941 - 41689897
Alignment:
Q  145 ttaaagttaccaaacaatgccctaaaggcacttgttaacatttcc 189  Q
    |||||||||| ||||||| |||||| | |||||||||||||||||    
T  41689941 ttaaagttactaaacaataccctaaggacacttgttaacatttcc 41689897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 11465761 - 11465591
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgattt 118  Q
    ||||||||||| ||||  ||||  ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||| |||| || ||||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattttcaatacagtgattt 11465662  T
Q  119 cataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttcc 189  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||| |||||| |||||    
T  11465661 cataaactttgacaaaaacttactatttaaagtttctaaataatgccctaaagacactcgttaacgtttcc 11465591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 32734648 - 32734823
Alignment:
Q  16 atggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    ||||| |||||||| ||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||   ||||||| |||||||||||||||      
T  32734648 atggttttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattctttaaaaaaggtaaaaactctaatttccaatgcattag 32734747  T
Q  116 tttcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccct 191  Q
    ||||||||| |||||||||||||||||| |||||||||| ||| |||| |||||||| ||| || |||||||||||    
T  32734748 tttcataaattttgacaaaaacttactacttaaagttactaaataatgtcctaaaggtactagtcaacatttccct 32734823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 53641804 - 53641638
Alignment:
Q  25 ttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaa 124  Q
    ||||| |||||  ||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||  |||||| |||||||||||||||||||    
T  53641804 ttaacgagtgccttaaggacactctttaaagatttctaataaagaaattattctttaaaaaattcaaaaacttaaatttctaatgcattgatttcataaa 53641705  T
Q  125 ctttgacaaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaacatttccct 191  Q
    ||||||||||||||||||||| |||||||  |||||||  | |||    ||||||||||||||||||    
T  53641704 ctttgacaaaaacttactattcaaagttattaaacaatatcttaagtatacttgttaacatttccct 53641638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 52299037 - 52299133
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 140  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52299037 cactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 52299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 4275340 - 4275196
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcat 121  Q
    ||||| || ||||| |||| | |||||||||| ||||  ||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||| ||    
T  4275340 ttgtttacgagtgctctaagggcactctttaaagattcttaataaaaaaattattctttaaaaaagttaaaaactccaacttccaatacattgattttat 4275241  T
Q  122 aaactttgacaaaaacttactatttaaagttaccaaacaatgccc 166  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||    
T  4275240 aaactttgacaaaaacttattatttaaagttattaaacaatgccc 4275196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 53605623 - 53605775
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatt 117  Q
    |||||||||||| ||| | |||| | |||| |||||| ||| ||||||| ||||||||| |||  ||| | | ||||||| |||||||||||||||||||    
T  53605623 ggtcttgttaacgagtaccctaagggcactttttaagaattcctaataatgaaattattttttctaaatgccaaaaactctaatttccaatgcattgatt 53605722  T
Q  118 tcataaactttgacaaaaacttactatttaaagttaccaaacaatgccctaaa 170  Q
    | ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  53605723 ttataaactttgataaaaacttactatttaaagttactaaacaataccctaaa 53605775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 30364173 - 30364025
Alignment:
Q  33 tgcactaaagacactctttaaggatttctaataaa-gaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgac 131  Q
    ||||||||| ||||||||||||||||  |||| || |||| |||| ||||||||| || |||| | |||||| || | ||||||||||||||||||| ||    
T  30364173 tgcactaaaaacactctttaaggattcttaatgaatgaaaatatt-tttaaaaaaatcaaaaatttcaattttca-tccattgatttcataaactttaac 30364076  T
Q  132 aaaaacttactatttaaagttaccaaacaatgccctaaaggcacttgttaa 182  Q
    |||||||| |||||||||||| | ||| |||||||||||| |||| |||||    
T  30364075 aaaaacttgctatttaaagttgctaaataatgccctaaagacactcgttaa 30364025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 52380936 - 52380856
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaa 124  Q
    |||||||||| |||| ||||||||||||||||| || |||||| || ||||||| |||||||||||||||||| |||||||    
T  52380936 cactctttaacgattcctaataaagaaattatttttaaaaaaaatcaaaaactctaatttccaatgcattgatctcataaa 52380856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 3973783 - 3973877
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    ||||||||||||||||| ||||   |||||||||||| || | ||| |||||||||||| ||||||||||  ||  || |||||||| |||||||    
T  3973783 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcatt 3973877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 4009622 - 4009528
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    ||||||||||||||||| ||||   |||||||||||| || | ||| |||||||||||| ||||||||||  ||  || |||||||| |||||||    
T  4009622 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcatt 4009528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 25299148 - 25299106
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  25299148 cactttttaagcatttctaataaagaaattattctttaaaaaa 25299106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 53040462 - 53040548
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaacttt 128  Q
    |||||||||||||||||   ||| ||||||||||| ||||||||| || || ||| |||||||||||| ||||| | || |||||||    
T  53040462 gacactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattgaatacacaaacttt 53040548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 31294339 - 31294436
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    |||||||||||| | ||| ||||| | | | ||||||| |||||||| ||||||||||||||| |||||||  || |||  ||||||| |||||||||    
T  31294339 ggtcttgttaacgaatgctctaaatatattatttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattga 31294436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 23554786 - 23554743
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattattctttaaaaa 85  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  23554786 gacactctttaaggattcttaataaagaaattattttttaaaaa 23554743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 3996094 - 3996000
Alignment:
Q  19 gtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcatt 113  Q
    ||||||||||||||||| ||||   |||||||||||| || | ||| ||| |||||||| ||||||||||  ||  || |||||||| |||||||    
T  3996094 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagcaattattccttaaaaaagttcaacgcttcaatttccgatgcatt 3996000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 47915062 - 47915021
Alignment:
Q  47 tctttaaggatttctaataaagaaattattctttaaaaaagt 88  Q
    |||||||| |||  ||||||||||||||||||||||||||||    
T  47915062 tctttaagcattcataataaagaaattattctttaaaaaagt 47915021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 2831539 - 2831587
Alignment:
Q  41 agacactctttaaggatttctaataaagaaattattctttaaaaaagtc 89  Q
    |||||||||||||||||| | ||| ||||||||||| ||||| ||||||    
T  2831539 agacactctttaaggattccaaatcaagaaattattttttaataaagtc 2831587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 13804956 - 13804888
Alignment:
Q  47 tctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    |||||||||||| | ||| ||||||| |||| || |||||||| || ||| | ||||||||||||||||    
T  13804956 tctttaaggattccgaattaagaaatcattccttcaaaaagtcaaatacttcgatttccaatgcattga 13804888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 48774 - 48872
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  48774 cactctttaatgatttctaataaagaaattattctttaaaaaaatcaaaaacttcaattttcaatgcattgatttcataaactttaacaaaaacttact 48872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 67672 - 67717
Alignment:
Q  41 agacactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  67672 agacactctttaagcatttctaatgaagaaattattctttaaaaaa 67717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 49015 - 49063
Alignment:
Q  139 tactatttaaagttaccaaacaatgccctaaaggcacttgttaacattt 187  Q
    |||||||||||||||| ||||||||||  || |||||||||||||||||    
T  49015 tactatttaaagttactaaacaatgcctaaagggcacttgttaacattt 49063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 67510 - 67446
Alignment:
Q  61 taataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaac 125  Q
    ||||||||||||||||||||||||| ||  ||||||  ||||| |||||||||||||||||||||    
T  67510 taataaagaaattattctttaaaaaggttaaaaactttaattttcaatgcattgatttcataaac 67446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 2983 - 3025
Alignment:
Q  44 cactctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  2983 cactctttaagcatttctaataaagaaattattctttaaaaaa 3025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 122576 - 122426
Alignment:
Q  44 cactctttaaggatttct-aataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 142  Q
    ||||||||||| |||||| ||| ||||||||||||||| |||||||  || |||  ||||||| ||||||| | | || ||  ||  | ||||| |||||    
T  122576 cactctttaag-atttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaattact 122478  T
Q  143 atttaaagttaccaaacaatgccctaaaggcacttgttaacatttccctttt 194  Q
    | ||||| |    ||| ||||||||||||||||| |||||||||||||||||    
T  122477 acttaaaatccttaaagaatgccctaaaggcactcgttaacatttccctttt 122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 4919 - 4953
Alignment:
Q  42 gacactctttaaggatttctaataaagaaattatt 76  Q
    ||||||||||||||||||| |||||||||||||||    
T  4919 gacactctttaaggatttcaaataaagaaattatt 4953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 5071 - 5030
Alignment:
Q  45 actctttaaggatttctaataaagaaattattctttaaaaaa 86  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    
T  5071 actctttaagcattcctaatgaagaaattattctttaaaaaa 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 5141 - 5044
Alignment:
Q  18 ggtcttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaactccaatttccaatgcattga 115  Q
    ||||||||||||||||||  |||  ||||| ||||||| || | ||| || ||||||||| ||||||||||  || | | |||||||| |||||||||    
T  5141 ggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattga 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 21274 - 21335
Alignment:
Q  22 ttgttaacaagtgcactaaagacactctttaaggatttctaataaagaaattattctttaaa 83  Q
    |||||||| ||||  |||| |||||||||||||| |||| ||| |||||||||||| |||||    
T  21274 ttgttaacgagtgtcctaatgacactctttaaggttttccaattaagaaattattccttaaa 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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