View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_high_7 (Length: 250)
Name: NF1421_high_7
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 5194515 - 5194734
Alignment:
| Q |
21 |
ataaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgcta |
120 |
Q |
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|||||| | ||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||| | |||||| |
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| T |
5194515 |
ataaaaggtttgtcatctatattttccttttatatcaaacacatttcatttatgcttaaaatgtgtttgaatcgggtctttgagtaagaattatttgcta |
5194614 |
T |
|
| Q |
121 |
aaaacaggacaaagttgagtaaacaaaagattgatcagtttcttccttttctgatgtcgcatctgtttgaaggcagtaacccacaccattgcaatctatg |
220 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||| |
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| T |
5194615 |
aaaacaggacaaagttgagtaaacaaaagattggtgagtttcttccttttctgacgtcgcctctgtttgaaggcagtaactcgcaccattgcaatctatg |
5194714 |
T |
|
| Q |
221 |
tttatattaattaccctatg |
240 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
5194715 |
tttatattaattaccctatg |
5194734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 5199500 - 5199360
Alignment:
| Q |
53 |
tgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagatt |
152 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5199500 |
tgtcatacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagatt |
5199401 |
T |
|
| Q |
153 |
gatcagtttcttccttttctgatgtcgcatctgtttgaagg |
193 |
Q |
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| T |
5199400 |
gatcagtttcttccttttctgatgtcgcatctgtttgaagg |
5199360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 5184234 - 5184355
Alignment:
| Q |
23 |
aaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaa |
122 |
Q |
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|||||||||||||| | | |||||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||| |
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| T |
5184234 |
aaaaagcttgtcatctgt-ttttccttatatgtcaaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaagaatgaattgctaaa |
5184332 |
T |
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| Q |
123 |
aacaggacaaagttgagtaaaca |
145 |
Q |
| |
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||||||||| | ||||| ||||| |
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| T |
5184333 |
aacaggacagaattgaggaaaca |
5184355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 5197864 - 5197761
Alignment:
| Q |
50 |
ttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaag |
149 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||| ||||||||| ||||||||||| ||| |
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| T |
5197864 |
ttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct--gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataag |
5197767 |
T |
|
| Q |
150 |
attgat |
155 |
Q |
| |
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|||||| |
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|
| T |
5197766 |
attgat |
5197761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 5175669 - 5175785
Alignment:
| Q |
39 |
atgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttga |
138 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||| |||||||| |||| ||||||||||||| |||||||| |||||||| ||||||| |||| |
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| T |
5175669 |
atgttttccttttatgcgaaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaataatgaatttctaaaaactggacaaaattga |
5175768 |
T |
|
| Q |
139 |
gtaaacaaaagattgat |
155 |
Q |
| |
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| ||||| ||||||||| |
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|
| T |
5175769 |
gcaaacagaagattgat |
5175785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 6233281 - 6233383
Alignment:
| Q |
22 |
taaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaa |
121 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||| | || |||||||||| |||||||| ||||| |||||||||||| ||| ||||| |||| |
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| T |
6233281 |
taaaaaacttgtcatcgatgttttccttttatgttaaacacgtctcttttatgcttaaaatgtgttaggatccgttctttgagtatgaaagaattcctaa |
6233380 |
T |
|
| Q |
122 |
aaa |
124 |
Q |
| |
|
||| |
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| T |
6233381 |
aaa |
6233383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 5177220 - 5177302
Alignment:
| Q |
158 |
gtttcttccttttctgatgtcgcatctgtttgaaggcagtaacccacaccattgcaatctatgtttatattaattaccctatg |
240 |
Q |
| |
|
||||||||||||||||| || | |||||||| |||||||||| ||| |||||||||| |||| ||||||||||||||||||| |
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| T |
5177220 |
gtttcttccttttctgacatcacctctgtttggaggcagtaactcacgccattgcaatttatgcttatattaattaccctatg |
5177302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 5199358 - 5199327
Alignment:
| Q |
207 |
cattgcaatctatgtttatattaattacccta |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
5199358 |
cattgcaatctatgtttatattaattacccta |
5199327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 5204845 - 5204939
Alignment:
| Q |
56 |
caaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagattgat |
155 |
Q |
| |
|
|||||||||| |||||||| || |||||||| ||||| || |||||||||| ||||| ||||||| ||||||| |||||||||||||||| |||| |
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| T |
5204845 |
caaacacattgcatttatgtttgaaatgtgttaggatc----ctctgagtaagaaagaattcctaaaaattggacaaa-ttgagtaaacaaaagaatgat |
5204939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 1796721 - 1796684
Alignment:
| Q |
118 |
ctaaaaacaggacaaagttgagtaaacaaaagattgat |
155 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||| |
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| T |
1796721 |
ctaaaaacagtacaaaattgagtaaacaaaagattgat |
1796684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 5178138 - 5178271
Alignment:
| Q |
23 |
aaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatg-aattgctaa |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| ||||| ||| |
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| T |
5178138 |
aaaaagcttgtcatctatgttttccttttatgtcaaacacatttcatttatgcttaaaatgtgtttggatctgttatttgcgtaagaatgaaattgttaa |
5178237 |
T |
|
| Q |
122 |
aaacaggacaaagttgagtaaacaaaagattgat |
155 |
Q |
| |
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|||||||||||| |||| ||||| |||||||||| |
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| T |
5178238 |
aaacaggacaaaattgaataaacgaaagattgat |
5178271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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