View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1421_high_8 (Length: 250)

Name: NF1421_high_8
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1421_high_8
NF1421_high_8
[»] chr5 (12 HSPs)
chr5 (1-240)||(8547454-8547693)
chr5 (104-224)||(9074125-9074245)
chr5 (109-220)||(1599691-1599802)
chr5 (106-224)||(8529538-8529656)
chr5 (114-224)||(8536110-8536220)
chr5 (148-218)||(2844444-2844514)
chr5 (148-218)||(2856277-2856347)
chr5 (148-218)||(2873887-2873957)
chr5 (148-218)||(2904393-2904463)
chr5 (13-60)||(8536024-8536071)
chr5 (121-215)||(11353898-11353992)
chr5 (121-215)||(11373401-11373495)
[»] scaffold0627 (1 HSPs)
scaffold0627 (5-239)||(5187-5418)
[»] chr6 (1 HSPs)
chr6 (5-236)||(16716885-16717113)
[»] chr7 (4 HSPs)
chr7 (108-224)||(48361239-48361355)
chr7 (104-220)||(35780427-35780544)
chr7 (13-60)||(35780336-35780383)
chr7 (13-60)||(48361388-48361435)
[»] chr4 (1 HSPs)
chr4 (106-224)||(9443699-9443817)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8547693 - 8547454
Alignment:
Q  1 ttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8547693 ttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaatataagctgtgtcatttggcatac 8547594  T
Q  101 gaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547593 gaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagcc 8547494  T
Q  201 actgcaagaattcacaatatcaaaatgatcacgatctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8547493 actgcaagaattcacaatatcaaaatgatcacgatctctg 8547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 9074245 - 9074125
Alignment:
Q  104 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccact 203  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| |    
T  9074245 tcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccatt 9074146  T
Q  204 gcaagaattcacaatatcaaa 224  Q
    |||||||||||||||||||||    
T  9074145 gcaagaattcacaatatcaaa 9074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  109 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 208  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  209 aattcacaatat 220  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  106 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 205  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  206 aagaattcacaatatcaaa 224  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  114 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 213  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  214 acaatatcaaa 224  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  148 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 218  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  148 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 218  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  148 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 218  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  148 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 218  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 8536024 - 8536071
Alignment:
Q  13 tttatcactttatattcattagttttaggatagaaaccacaaccagct 60  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  8536024 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  121 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 215  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  121 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 215  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 5187 - 5418
Alignment:
Q  5 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 104  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||   |||||   ||  |||  | | ||||||| |||||||||||     
T  5187 tccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagct---tcttgtcctattacacgaaccgtgtcatgtggcatacgaac 5283  T
Q  105 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 204  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  205 caagaattcacaatatcaaaatgatcacgatctct 239  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 16716885 - 16717113
Alignment:
Q  5 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||   |||||   ||  |||| | |  ||||||| ||||||||||     
T  16716885 tccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagct---tcttgtcctattacatgaaccctgtcattcggcatacgaac 16716981  T
Q  105 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 204  Q
     ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  205 caagaattcacaatatcaaaatgatcacgatc 236  Q
    || ||||||||||||| ||| | |||||||||    
T  16717082 catgaattcacaatattaaacttatcacgatc 16717113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  108 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 207  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  208 gaattcacaatatcaaa 224  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 35780427 - 35780544
Alignment:
Q  104 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccac 202  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| |||     
T  35780427 tcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccat 35780526  T
Q  203 tgcaagaattcacaatat 220  Q
    |||||||||| |||||||    
T  35780527 tgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 35780336 - 35780383
Alignment:
Q  13 tttatcactttatattcattagttttaggatagaaaccacaaccagct 60  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  35780336 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 48361435 - 48361388
Alignment:
Q  13 tttatcactttatattcattagttttaggatagaaaccacaaccagct 60  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48361435 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 48361388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  106 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 205  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  206 aagaattcacaatatcaaa 224  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University