View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_14 (Length: 237)
Name: NF1421_low_14
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45207359 - 45207464
Alignment:
| Q |
1 |
tggaaatcaaaattgtattcaaccagaagatataataaaattaaactaatttcacaagttgtcctaaagaacttattaacataagctgaaaacgtttatg |
100 |
Q |
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| T |
45207359 |
tggaaatcaaaattgtattcaaccaaaagatataataaaattaaactattttcacaagttgtcctaaagaacttattaacataagctgaaaacgtttatg |
45207458 |
T |
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| Q |
101 |
aatata |
106 |
Q |
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|||||| |
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| T |
45207459 |
aatata |
45207464 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 45207520 - 45207632
Alignment:
| Q |
101 |
aatatataaactcaagtatacaaattgaaatagacactaaaaagattttcgtgtagatataactaatagttttcttcatccataataatctttttagcgt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
45207520 |
aatatataaactcaagtatgcaaattgaaatagacactaaaaagattttcgtgtagata----taatagtagtcttcatc----ataatctttttagcgt |
45207611 |
T |
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| Q |
201 |
ctgtttgaatttacatatatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45207612 |
ctgtttgaatttacatatatt |
45207632 |
T |
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