View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1421_low_16 (Length: 229)

Name: NF1421_low_16
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1421_low_16
NF1421_low_16
[»] chr4 (28 HSPs)
chr4 (14-229)||(49011810-49012025)
chr4 (24-160)||(7388749-7388885)
chr4 (48-159)||(38682655-38682766)
chr4 (80-159)||(38949056-38949135)
chr4 (50-159)||(25751698-25751807)
chr4 (46-156)||(46506321-46506433)
chr4 (83-159)||(38380491-38380567)
chr4 (20-150)||(19652603-19652733)
chr4 (50-152)||(32893011-32893113)
chr4 (97-159)||(34469564-34469626)
chr4 (82-160)||(41370164-41370242)
chr4 (83-153)||(39804889-39804960)
chr4 (45-114)||(29459597-29459666)
chr4 (44-149)||(48097946-48098051)
chr4 (80-159)||(55855178-55855254)
chr4 (45-127)||(40071304-40071386)
chr4 (99-159)||(7852540-7852601)
chr4 (73-142)||(21142019-21142087)
chr4 (20-159)||(28695736-28695875)
chr4 (58-153)||(54495489-54495584)
chr4 (27-153)||(5047181-5047307)
chr4 (74-124)||(23133080-23133130)
chr4 (82-152)||(36721590-36721660)
chr4 (82-147)||(949889-949954)
chr4 (80-121)||(3341556-3341597)
chr4 (99-159)||(8297920-8297981)
chr4 (74-146)||(2063499-2063571)
chr4 (95-159)||(10042891-10042955)
[»] chr8 (33 HSPs)
chr8 (46-159)||(43238138-43238251)
chr8 (45-150)||(44042532-44042637)
chr8 (84-181)||(14237162-14237260)
chr8 (48-160)||(24457825-24457937)
chr8 (19-160)||(4507909-4508050)
chr8 (44-140)||(4166489-4166585)
chr8 (45-152)||(10565340-10565447)
chr8 (20-159)||(20142436-20142575)
chr8 (45-160)||(33285921-33286036)
chr8 (74-152)||(6904192-6904270)
chr8 (20-181)||(44254102-44254263)
chr8 (48-137)||(1162751-1162839)
chr8 (74-141)||(32332877-32332944)
chr8 (73-158)||(40464406-40464491)
chr8 (90-159)||(41646589-41646658)
chr8 (74-150)||(12787872-12787948)
chr8 (77-145)||(40914582-40914650)
chr8 (42-153)||(34336476-34336587)
chr8 (74-149)||(39691121-39691196)
chr8 (74-152)||(14855588-14855666)
chr8 (48-150)||(23984252-23984354)
chr8 (77-159)||(41105995-41106077)
chr8 (51-152)||(8797339-8797441)
chr8 (106-160)||(11078116-11078170)
chr8 (74-147)||(31265021-31265094)
chr8 (74-159)||(37564329-37564414)
chr8 (20-114)||(39312198-39312298)
chr8 (97-149)||(42880881-42880933)
chr8 (83-149)||(11727907-11727973)
chr8 (100-158)||(11872875-11872933)
chr8 (74-150)||(29487065-29487142)
chr8 (83-147)||(25279961-25280025)
chr8 (97-160)||(43120493-43120556)
[»] chr5 (20 HSPs)
chr5 (20-160)||(20125650-20125788)
chr5 (44-160)||(18988747-18988863)
chr5 (44-159)||(248458-248574)
chr5 (44-160)||(11010239-11010354)
chr5 (44-152)||(40944271-40944379)
chr5 (20-153)||(591227-591360)
chr5 (83-151)||(15206500-15206568)
chr5 (46-137)||(14116505-14116596)
chr5 (45-124)||(36486906-36486985)
chr5 (20-154)||(35947613-35947747)
chr5 (74-152)||(42877268-42877346)
chr5 (37-153)||(27146859-27146975)
chr5 (74-142)||(22528745-22528813)
chr5 (85-152)||(16980773-16980840)
chr5 (20-114)||(13978674-13978768)
chr5 (97-146)||(25437884-25437933)
chr5 (67-159)||(32730743-32730838)
chr5 (108-159)||(7968448-7968500)
chr5 (100-159)||(9276576-9276636)
chr5 (21-153)||(40872211-40872343)
[»] chr1 (27 HSPs)
chr1 (20-159)||(14758529-14758668)
chr1 (48-160)||(44920216-44920328)
chr1 (27-152)||(34582631-34582756)
chr1 (45-150)||(44584056-44584161)
chr1 (20-159)||(19547046-19547185)
chr1 (50-160)||(26765955-26766064)
chr1 (20-149)||(13792004-13792133)
chr1 (74-159)||(30529378-30529463)
chr1 (74-149)||(5423753-5423828)
chr1 (80-159)||(46729202-46729281)
chr1 (48-137)||(18032187-18032276)
chr1 (50-153)||(698829-698932)
chr1 (56-150)||(49338078-49338172)
chr1 (44-159)||(26297697-26297815)
chr1 (74-152)||(46895956-46896034)
chr1 (83-160)||(11247948-11248025)
chr1 (20-153)||(25670774-25670907)
chr1 (74-147)||(41649910-41649983)
chr1 (48-152)||(18038891-18038995)
chr1 (45-149)||(44442245-44442349)
chr1 (108-151)||(38294067-38294110)
chr1 (44-150)||(9500878-9500984)
chr1 (46-124)||(14890517-14890595)
chr1 (89-159)||(36564490-36564560)
chr1 (99-159)||(2864191-2864252)
chr1 (99-152)||(32562357-32562410)
chr1 (44-136)||(10895309-10895400)
[»] chr3 (19 HSPs)
chr3 (20-158)||(7278163-7278301)
chr3 (20-160)||(3973783-3973923)
chr3 (20-160)||(3995954-3996094)
chr3 (20-160)||(4009482-4009622)
chr3 (74-160)||(49682191-49682277)
chr3 (51-152)||(29212701-29212802)
chr3 (49-145)||(36494174-36494271)
chr3 (83-159)||(46895913-46895989)
chr3 (16-153)||(11465628-11465765)
chr3 (74-159)||(21813153-21813238)
chr3 (74-159)||(48811365-48811450)
chr3 (74-159)||(34285375-34285455)
chr3 (74-146)||(43803993-43804065)
chr3 (97-152)||(32606386-32606441)
chr3 (44-141)||(25299052-25299149)
chr3 (78-127)||(40553142-40553191)
chr3 (45-113)||(4824656-4824724)
chr3 (50-122)||(31294370-31294442)
chr3 (111-159)||(40629153-40629201)
[»] scaffold0172 (1 HSPs)
scaffold0172 (21-145)||(13436-13560)
[»] chr2 (18 HSPs)
chr2 (45-159)||(33962940-33963054)
chr2 (32-157)||(18734334-18734459)
chr2 (46-152)||(29260331-29260437)
chr2 (83-159)||(32438079-32438155)
chr2 (74-152)||(11580425-11580503)
chr2 (90-159)||(7933334-7933403)
chr2 (44-143)||(44195501-44195600)
chr2 (46-131)||(35719219-35719302)
chr2 (97-147)||(43745681-43745731)
chr2 (74-159)||(40347944-40348029)
chr2 (99-159)||(20064960-20065020)
chr2 (45-153)||(27501738-27501846)
chr2 (99-159)||(31452343-31452403)
chr2 (46-152)||(18375058-18375164)
chr2 (48-141)||(11252703-11252796)
chr2 (80-149)||(31643055-31643124)
chr2 (74-147)||(37082210-37082282)
chr2 (95-159)||(37597533-37597597)
[»] chr7 (24 HSPs)
chr7 (20-159)||(44319852-44319991)
chr7 (50-134)||(41898254-41898338)
chr7 (84-159)||(26235-26310)
chr7 (44-148)||(18926321-18926425)
chr7 (44-152)||(26638732-26638840)
chr7 (44-153)||(26402785-26402894)
chr7 (67-160)||(40722376-40722469)
chr7 (46-181)||(5495947-5496080)
chr7 (21-153)||(43210963-43211093)
chr7 (27-153)||(17883316-17883442)
chr7 (92-149)||(34681734-34681791)
chr7 (67-159)||(3298235-3298327)
chr7 (74-118)||(9031720-9031764)
chr7 (67-147)||(22688960-22689040)
chr7 (83-147)||(28324104-28324168)
chr7 (76-159)||(24934462-24934545)
chr7 (97-159)||(6771884-6771946)
chr7 (44-153)||(5248636-5248745)
chr7 (74-143)||(24557758-24557826)
chr7 (73-160)||(27156867-27156956)
chr7 (99-159)||(28663135-28663196)
chr7 (74-159)||(31902746-31902831)
chr7 (80-144)||(19914947-19915011)
chr7 (83-147)||(20397478-20397542)
[»] chr6 (9 HSPs)
chr6 (45-144)||(10570954-10571053)
chr6 (74-141)||(12735496-12735563)
chr6 (98-194)||(34530343-34530440)
chr6 (46-151)||(5678476-5678581)
chr6 (74-143)||(7340654-7340722)
chr6 (46-159)||(29988326-29988437)
chr6 (39-104)||(32254194-32254259)
chr6 (44-154)||(29407997-29408107)
chr6 (112-152)||(3441032-3441072)
[»] scaffold0027 (1 HSPs)
scaffold0027 (44-159)||(122462-122577)
[»] scaffold0633 (1 HSPs)
scaffold0633 (74-147)||(5013-5086)
[»] scaffold0268 (1 HSPs)
scaffold0268 (108-159)||(20245-20296)
[»] scaffold0062 (1 HSPs)
scaffold0062 (44-144)||(2982-3081)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 49012025 - 49011810
Alignment:
Q  14 gaatgagtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcat 113  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49012025 gaatgagttttgctaacgagtgacctaagtgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcat 49011926  T
Q  114 taaatgcacaagttttcataaaaacttactatttaaagttcttaaaatgctcttaagggcactcgttatcgtttccctataagaattttaaaataggacg 213  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49011925 taaatgcacaagttttcacaaaaacttactatttaaagtccttaaaatacttttaagggcactcgttatcgtttccctataagaattttaaaataggacg 49011826  T
Q  214 atcagggttattcaaa 229  Q
    ||||||||||||||||    
T  49011825 atcagggttattcaaa 49011810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 7388749 - 7388885
Alignment:
Q  24 tgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcaca 123  Q
    |||||||||||| |||||   ||||||| || ||||   ||| |||||  ||| |||| ||||||| ||||  | |||||| ||||||||||||||||||    
T  7388749 tgctaacaagtgccctaaggtcactcttgaaagattcccaattaagaaaatatccattgaaaaagtctaatgttccaatttccgatgcattaaatgcaca 7388848  T
Q  124 agttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| |||||||| ||||||| ||||||||||||||    
T  7388849 agtttccataaaaatttactatctaaagttcttaaaa 7388885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 38682655 - 38682766
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||| ||||||||| |||||  ||||||||||||| || ||||||||||||||  ||||||| |||| | ||| |||| ||||||| ||| ||| |    
T  38682655 tctttaagaatttttaattaagaaaatattcattaaaaatgtgtaatacttcaatttctgatgcatcaaatacgcaaatttttataaaaatttaatatct 38682754  T
Q  148 aaagttcttaaa 159  Q
    ||||||||||||    
T  38682755 aaagttcttaaa 38682766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 38949135 - 38949056
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||| |||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| |||| ||||||    
T  38949135 ttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatttcaagtccttaaa 38949056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 25751807 - 25751698
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||||||||| |||| |||||  ||||| ||||||||||  || | || ||||||| ||||||||| |||| ||| ||| |||||||||||||||||||    
T  25751807 tttaaggatttctaataaagaaattattctttaaaaaagtcaaaaaatttaattttcaatgcattaattgcataagctttaataaaaacttactatttaa 25751708  T
Q  150 agttcttaaa 159  Q
    |||| |||||    
T  25751707 agttattaaa 25751698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 46506321 - 46506433
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcatt--aaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||||||||| ||||| ||||| ||||| |||  |||||| | |||||||||||||| |||||||||||||| | || ||| || |||| ||||||    
T  46506321 actctttaaggattcttaattaagaaactatttattgaaaaaaaatctaatacttcaatttccgatgcattaaatggataaatttccacaaaagcttact 46506420  T
Q  144 atttaaagttctt 156  Q
    || ||||||||||    
T  46506421 atctaaagttctt 46506433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 38380491 - 38380567
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||||| |||||||||| ||| |||||||||||| || ||| |||||||| |||||||||||||| ||||||    
T  38380491 aaaaagtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactatttaaagtccttaaa 38380567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 19652603 - 19652733
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| ||||||||  |||||  ||||||||||||| || | ||| ||||   |||||||| |||| || ||||| || ||||| | ||||||| ||||    
T  19652603 gtcttgttaacaagtatcctaagagcactctttaaggtttctaaattaagatattattcattgaaaatgtataatagtttaatttccaatgcattgaatg 19652702  T
Q  120 cacaagttttcataaaaacttactatttaaa 150  Q
    ||||| |||||||||||||||||||| ||||    
T  19652703 cacaaattttcataaaaacttactatctaaa 19652733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 32893011 - 32893113
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||||| |||| ||| |||||| ||||  | |||||||||||| | |||||||||||||||||| ||||||||| |||  ||||||  |||||||||||    
T  32893011 tttaaggtttttcaattaagaatttatttttaaaaaaagtttaacatttcaattttcgatgcattgaatgcacaattttctataaaagtttactatttaa 32893110  T
Q  150 agt 152  Q
    |||    
T  32893111 agt 32893113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 34469626 - 34469564
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  34469626 ttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatttaaagtttttaaa 34469564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 41370242 - 41370164
Alignment:
Q  82 aaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||||||| |||| |||||||||| ||||||| | | ||||| ||||||||||||||||||||| ||||| |||||||    
T  41370242 aaaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaa 41370164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 39804960 - 39804889
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcata-aaaacttactatttaaagtt 153  Q
    ||||| ||||| ||||||||||| ||| |||||||||||||| |||||||| |||| |||||||||||||||    
T  39804960 aaaaaatttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatttactatttaaagtt 39804889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 29459597 - 29459666
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcatt 114  Q
    |||| |||||||||||| ||| ||||| ||||||||| |||| |||||||||||| |||||| |||||||    
T  29459597 cactttttaaggattttcaattaagaaactattcattgaaaacgtttaatacttcgattttcaatgcatt 29459666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 48097946 - 48098051
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||| |||||| ||| | ||| |||||  ||||| ||||||||||| |||| |||||||| | || |||||||| |||| ||||| ||||||| |||||    
T  48097946 gcactttttaagtattctaaattaagaaattattctttaaaaaagttaaatagttcaatttccaatacattaaatacacatgtttttataaaaagttact 48098045  T
Q  144 atttaa 149  Q
    ||||||    
T  48098046 atttaa 48098051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 55855178 - 55855254
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||||||| ||||||||||||||  |||||||| ||| | |||||||||||| ||| |||||||||| ||||||    
T  55855178 ttaaaaaagtttaacacttcaattttcga--cattaaat-cacgatttttcataaaaatttattatttaaagtccttaaa 55855254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 40071304 - 40071386
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagtt 127  Q
    |||||||||||||||| |||| |||||  ||| |||| |||||||  ||||||||||||| | | ||||| ||||||||||||    
T  40071304 cactctttaaggatttctaattaagaaattatgcattgaaaaagtccaatacttcaatttccaacgcattgaatgcacaagtt 40071386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 7852601 - 7852540
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcat-aaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  7852601 caattttcaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaa 7852540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 21142019 - 21142087
Alignment:
Q  73 ctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttac 142  Q
    ||||||||| ||||||| |||| ||| | ||| ||||||||||||||||||||||| |||||| ||||||    
T  21142019 ctattcattgaaaaagtctaatgcttta-tttccgatgcattaaatgcacaagtttacataaatacttac 21142087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 28695736 - 28695875
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||  ||||||||||||||||  |||| |||||  ||||  ||||||||||  || |||||||||| | ||| ||||| |     
T  28695736 gtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatgtattaattt 28695835  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    || ||  ||| | ||||| ||||||||||||||| |||||    
T  28695836 cataaactttgacaaaaatttactatttaaagttattaaa 28695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 54495489 - 54495584
Alignment:
Q  58 tttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagtt 153  Q
    |||||||| |||||  ||||  ||||||||||| || ||| |||||||| ||||||| | | || ||  ||| |||||||||||||||||||||||    
T  54495489 tttttaataaagaaattattttttaaaaaagttaaaaactccaattttcaatgcattgatttcataaactttgataaaaacttactatttaaagtt 54495584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 5047181 - 5047307
Alignment:
Q  27 taacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagt 126  Q
    |||| |||| |||||  |||||| |||||||||| |||| |||||  ||||||||| ||||||  || | |||||||| | ||||||| | | || ||      
T  5047181 taacgagtgccctaagggcactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaatgcattgatttcataaac 5047280  T
Q  127 tttcataaaaacttactatttaaagtt 153  Q
    ||| | |||||||||||||||||||||    
T  5047281 tttaaaaaaaacttactatttaaagtt 5047307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 23133130 - 23133080
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaa 124  Q
    ||||| |||||||||||||| |||||||||| ||||||||| ||| |||||    
T  23133130 tattccttaaaaaagtttaacacttcaatttccgatgcattgaatacacaa 23133080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 36721660 - 36721590
Alignment:
Q  82 aaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||||||  |||| ||||||| || ||||||| | | ||||| ||| |||||||||||||||||||||||    
T  36721660 aaaaaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaagt 36721590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 949954 - 949889
Alignment:
Q  82 aaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||| || || |||||||||||| ||||| |||||||||||  |||||||||| ||||| ||||    
T  949954 aaaaaaattaaagacttcaattttcaatgcaataaatgcacaaactttcataaaaccttaccattt 949889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 3341556 - 3341597
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgca 121  Q
    ||||||||||| |||| |||| ||||||||||||||||||||    
T  3341556 ttaaaaaagttaaatagttcagttttcgatgcattaaatgca 3341597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 8297920 - 8297981
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcat-aaaaacttactatttaaagttcttaaa 159  Q
    |||||| | ||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  8297920 caatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaa 8297981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 2063499 - 2063571
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatt 146  Q
    ||||| ||||||||||  || | |||||||| | ||| ||||||| ||||| |||||||||||| ||||||||    
T  2063499 tattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaaattttcataaaaagttactatt 2063571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 10042891 - 10042955
Alignment:
Q  95 acttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||| ||||||| | | || || |||| ||||||||||||||||||||||| |||||    
T  10042891 acttcaatgttcaatgcattgatttcataaattttaataaaaacttactatttaaagttattaaa 10042955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 43238251 - 43238138
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||||||||| |||| ||| |||||  ||||| |||||||||||||| ||||||||||||||||||||||||| | || ||| |||||||| |||||||    
T  43238251 actctttaaggtttttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaatttactat 43238152  T
Q  146 ttaaagttcttaaa 159  Q
    ||||||||||||||    
T  43238151 ttaaagttcttaaa 43238138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 44042532 - 44042637
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    |||||||||||||||  |||| ||||| ||||||||| |||||||| ||||||||||||| | ||||||| ||||||||| |||  ||||||||||||||    
T  44042532 cactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattgaatgcacaaatttctataaaaacttacta 44042631  T
Q  145 tttaaa 150  Q
    ||||||    
T  44042632 tttaaa 44042637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 14237162 - 14237260
Alignment:
Q  84 aaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaa--aatgctcttaagggcactcgtta 181  Q
    |||||||||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||| |||||  ||||||| |||||||||||||||    
T  14237162 aaaagtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaagaatgctc-taagggcactcgtta 14237260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 24457825 - 24457937
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||||| | | ||| || || ||||||||| ||||||| ||||  ||||||||   |||||||||| |||||||||||||||||||||||||||||    
T  24457825 tctttaaggaatctaaattaaaaaactattcattgaaaaagtctaatgtttcaatttcaaatgcattaaaagcacaagttttcataaaaacttactattt 24457924  T
Q  148 aaagttcttaaaa 160  Q
    |||||| ||||||    
T  24457925 aaagtttttaaaa 24457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 4508050 - 4507909
Alignment:
Q  19 agtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaat 118  Q
    |||||||||||| |||| |||||  |||||||||||||||  | ||| ||||| ||||| ||| |||||   | ||| ||||||||  ||||||||||||    
T  4508050 agtcttgctaacgagtgtcctaagggcactctttaaggatagtcaattaagaaactatttattgaaaaaacatcatatttcaatttctgatgcattaaat 4507951  T
Q  119 gcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||  |||||| ||||||||||||| || ||||||||||||||    
T  4507950 gcgtaagtttccataaaaacttaccatctaaagttcttaaaa 4507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 4166489 - 4166585
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactt 140  Q
    ||||||||||||||||  ||||||||||  |||||||| |||||||| |||| |||||||| | || |||| ||||||||||||| |||||||||||    
T  4166489 gcactctttaaggattcataatcaagaaattattcattgaaaaagttcaatatttcaatttccaatacattgaatgcacaagtttccataaaaactt 4166585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 10565340 - 10565447
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    ||||||||||| ||| | ||| ||||| ||||||||| ||||||| |||||||| |||||| |||| ||| ||||||||| ||| |||||||| ||||||    
T  10565340 cactctttaagaattctaaattaagaaactattcattgaaaaagtctaatactttaatttttgatgtattgaatgcacaaatttccataaaaatttacta 10565439  T
Q  145 tttaaagt 152  Q
    | ||||||    
T  10565440 tctaaagt 10565447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 20142575 - 20142436
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||   ||||||||||||  ||| ||| |||||  ||||  || ||||||||||| |||| ||||||||||||||||||||    
T  20142575 gtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaatg 20142476  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||  |||||||| ||| |||||||||| ||||||    
T  20142475 cacaatttcccataaaaatttattatttaaagtccttaaa 20142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 33286036 - 33285921
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    |||||||||||| || | ||| |||||  ||||  || ||||| ||||| | |||||||||||||| ||||||| ||||| |||||||||||| ||||||    
T  33286036 cactctttaaggtttatcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttacta 33285937  T
Q  145 tttaaagttcttaaaa 160  Q
    |||||||| |||||||    
T  33285936 tttaaagtccttaaaa 33285921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 6904192 - 6904270
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    |||||||| |||||||||||| ||||||||| ||||||||| || |||||||||| |||||||| ||||||| ||||||    
T  6904192 tattcattgaaaaagtttaatgcttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagt 6904270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 44254263 - 44254102
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||  ||||||||||||||||| |||| |||||  | ||| ||||||||||  || |||||||||| | ||||||| | |     
T  44254263 gtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattgattt 44254164  T
Q  120 cacaagttttcataaaaacttactatttaaagtt-cttaaaatgctcttaagggcactcgtta 181  Q
    || || |||| | ||||||||||||||||||||| || |||||| ||||||||||||| ||||    
T  44254163 cataaattttgacaaaaacttactatttaaagttactaaaaatg-tcttaagggcacttgtta 44254102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 1162839 - 1162751
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaa 137  Q
    |||||||||||||||||| |||||  |||| ||||||||||| |||||||||| ||||| || |||||||||||||| |||| |||||||    
T  1162839 tctttaaggatttttaattaagaaa-tatttattaaaaaagtctaatacttcacttttccatacattaaatgcacaattttttataaaaa 1162751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 32332877 - 32332944
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactta 141  Q
    |||||||| |||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  32332877 tattcattgaaaatgtttaatacttcgattttcgatgcattgaatgtataagttttcataaaaactta 32332944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 40464491 - 40464406
Alignment:
Q  73 ctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaa 158  Q
    ||||||||| |||| |||||||| ||||||||||||||  || ||||||||||||  |||||||| |||||||| ||||| |||||    
T  40464491 ctattcattgaaaatgtttaatatttcaattttcgatgttttgaatgcacaagttaccataaaaatttactattcaaagtccttaa 40464406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 41646589 - 41646658
Alignment:
Q  90 ttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||||||||||   || ||| |||||||||||||||||||||||||||||| |||||| ||||||    
T  41646589 ttaatacttcaatttttattgaattgaatgcacaagttttcataaaaacttactatctaaagtccttaaa 41646658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 12787872 - 12787948
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaa 150  Q
    |||| ||| ||||||| |||| ||||||||| | || |||||||||||||| |||||||||||||||||||| ||||    
T  12787872 tatttattgaaaaagtataatgcttcaatttccaattcattaaatgcacaaattttcataaaaacttactatctaaa 12787948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 40914650 - 40914582
Alignment:
Q  77 tcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||| ||||| | |||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||    
T  40914650 tcatttaaaaaatctaatacttcaattttcaatgcattaaattcacaaattttcataaaaatttactat 40914582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 34336587 - 34336476
Alignment:
Q  42 atgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactta 141  Q
    |||||||||||||||||| ||||| |||||  ||||| ||||||||||  || |||||||||| | ||||||| | | || ||  ||| | |||||||||    
T  34336587 atgcactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaactta 34336488  T
Q  142 ctatttaaagtt 153  Q
    ||||||||||||    
T  34336487 ctatttaaagtt 34336476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 39691196 - 39691121
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||| ||||||||||  |||| |||||||||| ||||||| ||| ||||| |||||||||||| |||||||||||    
T  39691196 tattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 14855666 - 14855588
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||| || ||||||||||| |||||||||| |||||||| ||||| |||  |||||||||||| ||| ||||||||||    
T  14855666 tattctttgaaaaagtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaatttattatttaaagt 14855588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 23984252 - 23984354
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||||| | |||| ||| |||||  ||||| |||||||||||||| || |||||||| ||| || | || |||||| |||||||||||| |||||||||    
T  23984252 tctttaaagtttttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttttcataaaaatttactattt 23984351  T
Q  148 aaa 150  Q
    |||    
T  23984352 aaa 23984354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 41106077 - 41105995
Alignment:
Q  77 tcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||||||  |||| |||||||||| ||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||    
T  41106077 tcattaaaaaagtcaaatagttcaattttcaatgcattgaattcacaatttttcgtaaaaacttaccatttaaggtccttaaa 41105995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 8797339 - 8797441
Alignment:
Q  51 ttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatg-cattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||||||| | ||| |||||  | ||||||||||| ||| ||| |||||||| |||||| ||||||||||||||||||  ||| ||| ||||||| |||    
T  8797339 ttaaggattctcaattaagaaattgttcattaaaaatgttcaatgcttcaattctcgatgacattaaatgcacaagtttctatacaaatttactatataa 8797438  T
Q  150 agt 152  Q
    |||    
T  8797439 agt 8797441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 11078116 - 11078170
Alignment:
Q  106 cgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||||||| |||||| || |||||||||||| |||||||||| |||||||||||    
T  11078116 cgatgcattgaatgcataatttttcataaaaatttactatttagagttcttaaaa 11078170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 31265021 - 31265094
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||| ||||||||||  || | |||||||| | ||| ||||||| |||||||||||||||||| |||||||||    
T  31265021 tattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaagttttcataaaaagttactattt 31265094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 37564414 - 37564329
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||||||||||  |||| |||||||| | ||| ||||||| |||||||||||||||||  ||||||||  ||| |||||||    
T  37564414 tattctttaaaaaagtcaaatagttcaatttccaatgtattaaatacacaagttttcataaaaggttactattctaagctcttaaa 37564329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 39312298 - 39312198
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatca------agaatctattcattaaaaaagtttaatacttcaattttcgatgcat 113  Q
    |||||||||||||||| ||  |  |||||||||||||||| ||||| |      ||||  |||||||| |||||||||||||||||||||| ||||||||    
T  39312298 gtcttgctaacaagtgcccatagggcactctttaaggattcttaattaggaaaaagaaattattcattgaaaaagtttaatacttcaatttccgatgcat 39312199  T
Q  114 t 114  Q
    |    
T  39312198 t 39312198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 42880881 - 42880933
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    |||||||| ||||||||||||| |||| ||||| ||||||| |||||||||||    
T  42880881 ttcaatttccgatgcattaaatacacatgtttttataaaaaattactatttaa 42880933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 11727973 - 11727907
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    |||||||  ||||||||||||||| || ||||||||  |||| ||||||| |||||||| |||||||    
T  11727973 aaaaagtcaaatacttcaattttcaatacattaaatatacaaattttcattaaaacttattatttaa 11727907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 11872875 - 11872933
Alignment:
Q  100 aattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaa 158  Q
    ||||||||||  ||| |||| | ||||||| ||||||||||||||| ||||||||||||    
T  11872875 aattttcgatatattgaatgtataagtttttataaaaacttactatctaaagttcttaa 11872933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 29487142 - 29487065
Alignment:
Q  74 tattcattaaaaaagttt-aatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaa 150  Q
    ||||| |||||||||||| |||| |||||||||| ||||||| ||| ||||  |||| ||||||| |||||| |||||    
T  29487142 tattctttaaaaaagtttaaatagttcaattttcaatgcatttaatacacatatttttataaaaagttactacttaaa 29487065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 25279961 - 25280025
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||  |||| |||||||| | ||| ||||||| || ||||||||||||||| |||||||||    
T  25279961 aaaaagtcaaataattcaatttccaatgtattaaatacataagttttcataaaaatttactattt 25280025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 43120493 - 43120556
Alignment:
Q  97 ttcaattttcgatgcattaaatgca-caagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    |||||||||| ||||||||||| || ||| || | ||||||||||||||||||||||| ||||||    
T  43120493 ttcaattttcaatgcattaaattcatcaacttct-ataaaaacttactatttaaagttgttaaaa 43120556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 20125788 - 20125650
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| | |||| ||||| ||||| | |||| ||| |||||| ||||| |||||||||||||| |||||||||||||||||| ||||||    
T  20125788 gtcttgttaacgagtgtcttaaaggcact-tttaaagtttttcaattaagaat-tattctttaaaaaagtttaacacttcaattttcgatgcactaaatg 20125691  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| |||||||||||| |||||||||||||| |||||||    
T  20125690 cacaatttttcataaaaatttactatttaaagtccttaaaa 20125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 18988747 - 18988863
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||| ||||||  || | || ||||||||||| |||||||| |||||||| ||||| | ||||||| |||||| ||||||||||||||| |||||    
T  18988747 gcactctttgaggattcctacttaaaaatctattcatcaaaaaagtctaatacttaaatttccaatgcattgaatgcataagttttcataaaaatttact 18988846  T
Q  144 atttaaagttcttaaaa 160  Q
    || ||| || |||||||    
T  18988847 atctaatgtccttaaaa 18988863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 248574 - 248458
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctatt-cattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttac 142  Q
    ||||||||||||| || | ||| |||||  |||| | |||||||||||||| |||||||||| ||||| ||| ||||||||| ||| |||||||| ||||    
T  248574 gcactctttaaggtttctcaattaagaaattatttctttaaaaaagtttaacacttcaatttccgatgtattgaatgcacaattttccataaaaatttac 248475  T
Q  143 tatttaaagttcttaaa 159  Q
    ||||| |||| ||||||    
T  248474 tatttcaagtccttaaa 248458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 11010239 - 11010354
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||||| ||||| | ||| ||||| ||||||||| ||||||| ||||||||||||||  |||||||| ||| ||||| ||| ||||||||| ||||    
T  11010239 gcactcttta-ggattctaaattaagaaactattcattgaaaaagtctaatacttcaatttctgatgcattgaatacacaactttccataaaaacatact 11010337  T
Q  144 atttaaagttcttaaaa 160  Q
    || | |||| |||||||    
T  11010338 atctgaagtccttaaaa 11010354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 40944379 - 40944271
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||| ||| |||||| | ||| |||||  |||||||| ||||||| |||| ||||||||||||||||||| |||| |||| ||| |||||||| |||||    
T  40944379 gcacttttttaggattctaaattaagaaattattcattgaaaaagtataatgcttcaattttcgatgcattgaatgtacaaatttccataaaaatttact 40944280  T
Q  144 atttaaagt 152  Q
    || ||||||    
T  40944279 atctaaagt 40944271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 591360 - 591227
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| ||||||  |||||||||||||||| |||| |||||  ||||| ||||||||||  || |||||||||| | ||||||| | |     
T  591360 gtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcattgattt 591261  T
Q  120 cacaagttttcataaaaacttactatttaaagtt 153  Q
    || ||  ||| | |||||||||||||||||||||    
T  591260 cataaactttgacaaaaacttactatttaaagtt 591227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 15206568 - 15206500
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaag 151  Q
    |||||||  |||||||||||||||||| |||| ||||||||| |||||||||||| ||| |||||||||    
T  15206568 aaaaagtccaatacttcaattttcgattcattgaatgcacaaattttcataaaaaattattatttaaag 15206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 14116505 - 14116596
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaa 137  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||||| |||| ||  ||||||||||  ||||||||||||| ||| || |||||    
T  14116505 actctttaaggattttcaattaagaaactatttattaaaaaagtctaatgctctaattttcgataaattaaatgcacaaatttccaaaaaaa 14116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 36486906 - 36486985
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaa 124  Q
    ||||||||||| ||||||||| |||||  ||||| ||||||||||| || |||||||||||| ||||| |||||| ||||    
T  36486906 cactctttaagcatttttaataaagaaattattctttaaaaaagttcaagacttcaattttcaatgcaataaatgtacaa 36486985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 35947613 - 35947747
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    ||||| ||||| |||| |||||  ||| || ||||||||  | ||||||||| |||||||||  ||||  |||||| |||||||||||||||||  |||     
T  35947613 gtcttactaacgagtgtcctaagggcagtcattaaggatactcaatcaagaaactattcattggaaaaacttaatatttcaattttcgatgcatagaatt 35947712  T
Q  120 cacaagttttcataaaaacttactatttaaagttc 154  Q
    ||||| |||  |||||  |||||||||||||||||    
T  35947713 cacaaatttctataaacccttactatttaaagttc 35947747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 42877268 - 42877346
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||||| |||||||||||| | |||||||||| ||| ||| ||| ||||| ||| |||||||| ||||||||||||||    
T  42877268 tattcatgaaaaaagtttaaaatttcaattttcaatgtattgaatacacaattttccataaaaatttactatttaaagt 42877346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 27146859 - 27146975
Alignment:
Q  37 cctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaa 136  Q
    |||||| ||||||||||||||||| |||| |||||  ||||| ||||||||||| || |||  ||||| | ||||||| | | || ||  ||| | ||||    
T  27146859 cctaaaggcactctttaaggatttctaataaagaaattattctttaaaaaagttaaaaactctaatttccaatgcattgatttcataaactttgacaaaa 27146958  T
Q  137 acttactatttaaagtt 153  Q
    |||||||||||||||||    
T  27146959 acttactatttaaagtt 27146975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 22528813 - 22528745
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttac 142  Q
    |||||||| ||||||||| || ||||||||| |||| |||||||| || || |||||||||||| ||||    
T  22528813 tattcattgaaaaagtttgatgcttcaatttccgatacattaaatacataaattttcataaaaatttac 22528745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 16980773 - 16980840
Alignment:
Q  85 aaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||||||| |||||||||| |||| |||| |||| | || ||||||||||||  |||||||||||||    
T  16980773 aaagtttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatttaaagt 16980840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 13978768 - 13978674
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcatt 114  Q
    |||||| |||| |||| |||||| ||||| |||||||||||  ||| |||||  ||||  ||||||||||| || |||||||||| | |||||||    
T  13978768 gtcttgttaacgagtgtcctaaaggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcatt 13978674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 25437933 - 25437884
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatt 146  Q
    |||||||| | ||| ||||||| |||||||||||||||||| ||||||||    
T  25437933 ttcaatttccaatgtattaaatacacaagttttcataaaaagttactatt 25437884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 32730743 - 32730838
Alignment:
Q  67 aagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaac---ttactatttaaagttcttaaa 159  Q
    ||||| ||||||||||||||  | |||||  || |||| |||| |||  ||||||||| |||||||||||||   ||||||| |||||||||||||    
T  32730743 aagaaactattcattaaaaatatctaataactcgatttccgatacatcgaatgcacaaattttcataaaaacttattactatctaaagttcttaaa 32730838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 7968448 - 7968500
Alignment:
Q  108 atgcattaaatgcacaagttttcat-aaaaacttactatttaaagttcttaaa 159  Q
    ||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  7968448 atgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaa 7968500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 9276636 - 9276576
Alignment:
Q  100 aattttcgatgcattaaatgcacaagttttcat-aaaaacttactatttaaagttcttaaa 159  Q
    ||||||| ||||||| ||| || || ||||||| |||||||||||||||||||| ||||||    
T  9276636 aattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaa 9276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 40872211 - 40872343
Alignment:
Q  21 tcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgc 120  Q
    ||||| |||| |||| |||||  | |||||||||| | || |||| |||||  ||||| ||||||| ||| || ||| |||||| | ||||||| | | |    
T  40872211 tcttgttaacgagtgccctaagggtactctttaagaaattctaataaagaaattattctttaaaaaggttaaaaactccaatttccaatgcattgatttc 40872310  T
Q  121 acaagttttcataaaaacttactatttaaagtt 153  Q
    | ||  ||| |||||||||||||||||||||||    
T  40872311 ataaactttgataaaaacttactatttaaagtt 40872343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 14758529 - 14758668
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||  ||||||||||| | |||  ||| |||||  ||||| |||||||||||||| | |||||||||||||||||| ||||    
T  14758529 gtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattgaatg 14758628  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| |||||||||||| |||||||||||||| ||||||    
T  14758629 cacaatttttcataaaaatttactatttaaagtccttaaa 14758668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 44920216 - 44920328
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||||||| || | ||| |||||  |||||||||||||||||||| ||||||||||  |||||||| ||||||||| ||| |||||||| |||||||||    
T  44920216 tctttaaggtttctcaattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcattgaatgcacaattttccataaaaatttactattt 44920315  T
Q  148 aaagttcttaaaa 160  Q
     |||| |||||||    
T  44920316 caagtccttaaaa 44920328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 34582631 - 34582756
Alignment:
Q  27 taacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagt 126  Q
    |||| |||| |||||  |||||||| ||||||||| ||| || ||  |||||| | ||||||| |||| |||||||||  |||||||| |||||| ||||    
T  34582631 taacgagtgccctaagagcactcttcaaggattttaaattaaaaaattattcaatgaaaaagtataatgcttcaatttctgatgcattgaatgcataagt 34582730  T
Q  127 tttcataaaaacttactatttaaagt 152  Q
    ||||||||||||||||||| ||||||    
T  34582731 tttcataaaaacttactatctaaagt 34582756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 44584161 - 44584056
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    ||||||||||||| | | ||| ||||| |||||  || ||||||| ||||  |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  44584161 cactctttaaggaatctaaattaagaaactatttgttgaaaaagtctaatgtttcaattttcaatgtattaaatgcacaagttttcataaaaacttacta 44584062  T
Q  145 tttaaa 150  Q
    | ||||    
T  44584061 tctaaa 44584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 19547185 - 19547046
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    ||||||||||| |||| |||||  ||| ||||||||||||   ||  |||||  |||||||| |||| ||  ||||||||||||  ||||||||| ||||    
T  19547185 gtcttgctaacgagtgccctaagggcattctttaaggattcccaagtaagaaattattcattgaaaatgtccaatacttcaattcccgatgcattgaatg 19547086  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||  ||||||||||||||| |||||| ||||||    
T  19547085 cacaagtttctataaaaacttactatataaagtccttaaa 19547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 26765955 - 26766064
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||| |||||||||| || || ||||||||| ||||||||||||| ||||||||  |||| ||| |||||| ||||||| ||| ||||||||||| |||    
T  26765955 tttaaagatttttaataaaaaa-ctattcattgaaaaagtttaatatttcaatttctgatggattgaatgcataagtttttatataaacttactatctaa 26766053  T
Q  150 agttcttaaaa 160  Q
    ||| |||||||    
T  26766054 agtccttaaaa 26766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 13792133 - 13792004
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    ||||||||||| |||| ||| ||  |||||||||||| |||||||| || ||  ||||  || ||||||||||| ||||||||| | |||||||| ||||    
T  13792133 gtcttgctaacgagtgtccttaagacactctttaaggttttttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgcatttaatg 13792034  T
Q  120 cacaagttttcataaaaacttactatttaa 149  Q
    ||||| || | ||||||| |||||||||||    
T  13792033 cacaatttcttataaaaatttactatttaa 13792004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 30529378 - 30529463
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| || ||||| ||||| ||||||||||  |||||||||||||||||| ||| |||||||| |||||||||||||| ||||||    
T  30529378 tattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaa 30529463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 5423828 - 5423753
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||| ||||||||||| |||| |||||||||| ||||||||||| || ||||||||||||||| |||| ||||||    
T  5423828 tattctttaaaaaagttaaatagttcaattttcaatgcattaaatacataagttttcataaaaaattaccatttaa 5423753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 46729202 - 46729281
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||| |||| ||||||| || ||||||||| ||||||||| ||| |||||||| |||||||||||||| ||||||    
T  46729202 ttaaaaaagattaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtccttaaa 46729281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 18032187 - 18032276
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaa 137  Q
    ||||||| |||| | ||| |||||  |||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||    
T  18032187 tctttaaagattctgaattaagaaattatttattgaaaaagtttaatgcttcaatttccgatgcattaaatgcataagtttccataaaaa 18032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 698932 - 698829
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    |||||||||||||||| |||||  ||||||||||||||||| || |||  ||||| | ||||||| | | || ||  ||| |||||||||||||||||||    
T  698932 tttaaggatttttaataaagaaattattcattaaaaaagttaaaaactcaaatttccaatgcattgatttcataaactttgataaaaacttactatttaa 698833  T
Q  150 agtt 153  Q
    ||||    
T  698832 agtt 698829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 49338078 - 49338172
Alignment:
Q  56 gatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaa 150  Q
    |||||||||| || ||  |||||||||||||| ||||||  |||||||||||||  || ||||| |||| |||||||||||| ||||||| ||||    
T  49338078 gatttttaattaaaaaattattcattaaaaaaatttaatgtttcaattttcgatatataaaatggacaaattttcataaaaatttactatctaaa 49338172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 26297697 - 26297815
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcat---taaatgcacaagttttcataaaaactt 140  Q
    |||||||||||| |||   ||| | ||| ||||||||| |||||| |||||| |||||||| ||||||||     |||||||||||||  ||||||||||    
T  26297697 gcactctttaagtattcccaattatgaaactattcattgaaaaagcttaatatttcaatttccgatgcatagaagaatgcacaagtttctataaaaactt 26297796  T
Q  141 actatttaaagttcttaaa 159  Q
    ||||| |||||| ||||||    
T  26297797 actatctaaagtccttaaa 26297815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 46895956 - 46896034
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    |||| ||| ||||||| ||||| |||||||| ||||||||| |||||| || |||  ||||||||||||||| ||||||    
T  46895956 tatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactatctaaagt 46896034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 11247948 - 11248025
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| || |||||||||||||||||| ||| ||||| |||| ||||| |||||||| | ||| |||||| |||||||    
T  11247948 aaaaaattcaatacttcaattttcgatacataaaatgtacaaattttcctaaaaactaattatataaagtccttaaaa 11248025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 25670907 - 25670774
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||  ||||  ||||||||||| |||| |||||  ||||| ||||||||||  || ||| |||||||| ||||||| | |     
T  25670907 gtcttgttaacgagtgccctaagagcaccttttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgattt 25670808  T
Q  120 cacaagttttcataaaaacttactatttaaagtt 153  Q
    || ||  ||| | |||||||||||||||||||||    
T  25670807 cataaactttaacaaaaacttactatttaaagtt 25670774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 41649910 - 41649983
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||| |||||||||||||| | |||||||| | ||||||| |||||| || ||| |||||||| |||||||||    
T  41649910 tattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 41649983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 18038891 - 18038995
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||| ||| | ||| ||||| | || |||| ||||| | |||| ||||||||| ||||||||| ||| ||||| |||||||||||| ||| ||| |    
T  18038891 tctttaagtattctgaattaagaaacaatgcattgaaaaaatctaatgcttcaatttccgatgcattgaatacacaaattttcataaaaaattattatct 18038990  T
Q  148 aaagt 152  Q
    |||||    
T  18038991 aaagt 18038995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 44442245 - 44442349
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    |||| |||||| ||||| ||| | |||  ||||| ||||||||||  |||| |||||||||| || |||||||| ||||  |||| ||||||| ||||||    
T  44442245 cactttttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttacta 44442344  T
Q  145 tttaa 149  Q
    |||||    
T  44442345 tttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 38294067 - 38294110
Alignment:
Q  108 atgcattaaatgcacaagttttcataaaaacttactatttaaag 151  Q
    ||||||| |||||||||||||  |||||||||||||||||||||    
T  38294067 atgcattgaatgcacaagtttctataaaaacttactatttaaag 38294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 9500984 - 9500878
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||||| || | | ||| ||||| ||||| ||| ||||||| |||||||||||||||| |||  ||  |  |||||||||| ||||||| |||||    
T  9500984 gcactctttaatgaatctaaattaagaaactatttattgaaaaagtctaatacttcaattttcaatgacttggaaacacaagtttttataaaaatttact 9500885  T
Q  144 atttaaa 150  Q
    || ||||    
T  9500884 atctaaa 9500878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 14890595 - 14890517
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaa 124  Q
    |||||||||||||| ||||| || ||  |||| ||| |||||  ||||||||||||||| |||| |||| |||||||||    
T  14890595 actctttaaggattcttaattaaaaaattattaattgaaaaaacttaatacttcaatttccgatacattgaatgcacaa 14890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 36564560 - 36564490
Alignment:
Q  89 tttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||||||||||   | ||||| ||||||||| |||||||||||  |||||||||||||| ||||||    
T  36564560 tttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatttaaagtccttaaa 36564490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 2864191 - 2864252
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcat-aaaaacttactatttaaagttcttaaa 159  Q
    |||||| | ||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  2864191 caatttccaatgcattcaatacacaacttttcattaaaaacttactatttaaagtgcttaaa 2864252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 32562410 - 32562357
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||||||    
T  32562410 caattttcaatgcagtgaatacacaattttttataaaaacttactatttaaagt 32562357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 10895309 - 10895400
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaa 136  Q
    |||||||||||  ||||||||| |||||  ||||| ||||||||  | || |||| ||||||| ||||| |||||||||||  ||||||||||    
T  10895309 gcactctttaaacatttttaatgaagaagttattctttaaaaaaagt-aagactttaattttcaatgcaataaatgcacaaactttcataaaa 10895400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 7278301 - 7278163
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    ||||||||||| |||| |||||  |||||||||||||||  | ||| | ||| |||||||||| ||||| |||||| ||| |||| | ||||||| ||||    
T  7278301 gtcttgctaacgagtgccctaagggcactctttaaggatactcaattacgaaactattcattagaaaagcttaatatttcgatttccaatgcattcaatg 7278202  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaa 158  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  7278201 cacaagtttcgataaaaacttactatttaaagttcttaa 7278163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 3973783 - 3973923
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| ||||||||| |||||  ||||||||||||| ||   ||| |||||  ||||| ||||||||||| ||  ||||||||| ||||||||||||||    
T  3973783 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 3973882  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| ||| |||||||| ||||||||| |||| |||||||    
T  3973883 cacaattttccataaaaatttactatttcaagtccttaaaa 3973923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 3996094 - 3995954
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| ||||||||| |||||  ||||||||||||| ||   ||| ||| |  ||||| ||||||||||| ||  ||||||||| ||||||||||||||    
T  3996094 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagcaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 3995995  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| ||| |||||||| ||||||||| |||| |||||||    
T  3995994 cacaattttccataaaaatttactatttcaagtccttaaaa 3995954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 4009622 - 4009482
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| ||||||||| |||||  ||||||||||||| ||   ||| |||||  ||||| ||||||||||| ||  ||||||||| ||||||||||||||    
T  4009622 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 4009523  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| ||| || ||||| ||||||||| | || |||||||    
T  4009522 cacaattttccacaaaaatttactatttcatgtccttaaaa 4009482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 49682191 - 49682277
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    ||||| |||||||||||||| | |||||||| ||| ||||| ||||||||| |||  ||||||| |||||||||||||| |||||||    
T  49682191 tattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaa 49682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 29212701 - 29212802
Alignment:
Q  51 ttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaa 150  Q
    ||||||||||| ||| ||||| ||||||||| ||||||| |||| |||||||||  |||| ||| |||||||||||||  ||||||| ||| ||| ||||    
T  29212701 ttaaggattttaaattaagaaactattcattgaaaaagtctaatgcttcaatttatgatgtattgaatgcacaagtttctataaaaatttaatatctaaa 29212800  T
Q  151 gt 152  Q
    ||    
T  29212801 gt 29212802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 36494174 - 36494271
Alignment:
Q  49 ctttaaggatttttaatcaagaatctattcatt-aaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    |||||||||||   ||| ||||| ||||||||| |||||| | |||||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||    
T  36494174 ctttaaggattcccaattaagaaactattcattgaaaaaaatctaatacttcaatttccaatgtattgaatgcacaagtttccataaaaacttactat 36494271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 46895989 - 46895913
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| || ||||||||||| |||||||| |||||| || |||| ||||||||||||||||||| ||| |||||    
T  46895989 aaaaagttaaagacttcaatttttgatgcattgaatgcataaatttttataaaaacttactatttaaggttattaaa 46895913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 11465765 - 11465628
Alignment:
Q  16 atgagtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcatta 115  Q
    |||||||||| |||| |||| |||||   ||||||||||||||||||||| || ||  ||||| ||||||||||  || |||||||||||| || || |     
T  11465765 atgagtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattttcaatacagtg 11465666  T
Q  116 aatgcacaagttttcataaaaacttactatttaaagtt 153  Q
    | | || ||  ||| | |||||||||||||||||||||    
T  11465665 atttcataaactttgacaaaaacttactatttaaagtt 11465628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 21813238 - 21813153
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||||||||| |||| || || ||||||||| |||||| || ||| |||||||| |||||||||||| | ||||||    
T  21813238 tattcattgaaaaagtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatttaaaatccttaaa 21813153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 48811450 - 48811365
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||||||||| ||||  | ||| |||| ||||||| | | ||||| ||||||||||||||||||||| |||||| |||||    
T  48811450 tattcattaaaaaagtctaatgttacaaatttcaatgcattgattacacaatttttcataaaaacttactattaaaagtttttaaa 48811365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 34285375 - 34285455
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| |||||||||||||| ||||||| || |     ||||||||||||| |||| ||||||| ||||||||||||||| |||||    
T  34285375 tattctttaaaaaagtttaacacttcaacttcc-----attaaatgcacaaatttttataaaaatttactatttaaagttattaaa 34285455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 43803993 - 43804065
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatt 146  Q
    ||||| ||||||||||  || | |||||||| | ||| ||||||| |||||||||||||||||| ||||||||    
T  43803993 tattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaagttttcataaaaagttactatt 43804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 32606441 - 32606386
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    |||||||| ||||||||| |||||| || |||||||||||| ||| ||||||||||    
T  32606441 ttcaatttccgatgcattgaatgcataatttttcataaaaatttattatttaaagt 32606386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 25299149 - 25299052
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactta 141  Q
    ||||| |||||| |||| |||| |||||  ||||| ||||||||  | || | |||||||||| ||||| |||||||||||  |||||||||| ||||    
T  25299149 gcactttttaagcatttctaataaagaaattattctttaaaaaaagtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatctta 25299052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 40553191 - 40553142
Alignment:
Q  78 cattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagtt 127  Q
    |||||||||||||||||  |||||| | ||||||||||||| ||||||||    
T  40553191 cattaaaaaagtttaatgtttcaatatccgatgcattaaattcacaagtt 40553142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 4824724 - 4824656
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcat 113  Q
    ||||||||||||||| | ||| |||||  |||| | ||||||| || ||||||||||||||| ||||||    
T  4824724 cactctttaaggattctaaattaagaaattattaactaaaaaatttaaatacttcaattttcaatgcat 4824656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 31294370 - 31294442
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcac 122  Q
    ||||||| ||| |||| |||||  ||||| || ||||||||||| |||| ||||| ||||||||| |||||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattgaatgcac 31294442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 40629153 - 40629201
Alignment:
Q  111 cattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||| |||||    
T  40629153 cattaaatgcacaagtttttataaaatcttattatctaaagtttttaaa 40629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 13436 - 13560
Alignment:
Q  21 tcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgc 120  Q
    |||||||||  |||| |||||  ||||||||||| ||||  |||| ||||| ||||||||| ||||||| |||||||||||||| |||||| || |||||    
T  13436 tcttgctaatgagtgccctaagggcactctttaaagattcctaattaagaaactattcattgaaaaagtctaatacttcaatttccgatgctttgaatgc 13535  T
Q  121 acaagttttcataaaaacttactat 145  Q
    |||||||| ||||||||| ||||||    
T  13536 acaagtttccataaaaacctactat 13560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 33963054 - 33962940
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    |||||||||| | |||  ||| |||||  ||||| |||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||| ||| ||    
T  33963054 cactctttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttatta 33962955  T
Q  145 tttaaagttcttaaa 159  Q
    |||||||| ||||||    
T  33962954 tttaaagtccttaaa 33962940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 18734334 - 18734459
Alignment:
Q  32 agtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttca 131  Q
    |||| |||||| ||||||| ||||| || | ||| |||||  ||||| |||||||||||||| |||||||||| |||| |||| ||||||||| ||||||    
T  18734334 agtgtcctaaaggcactctctaaggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttca 18734433  T
Q  132 taaaaacttactatttaaagttctta 157  Q
    |||||| ||||||||| |||| ||||    
T  18734434 taaaaatttactatttcaagtcctta 18734459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 29260437 - 29260331
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    |||||||||||||| ||||| |||||  || | ||| |||||  ||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  29260437 actctttaaggattcttaattaagaaaataattatttaaaaaacttaatccttcaattttcgatgcattaaatgctcaaactttcataaaaacttactat 29260338  T
Q  146 ttaaagt 152  Q
     ||||||    
T  29260337 ctaaagt 29260331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 32438155 - 32438079
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||| |||||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||    
T  32438155 aaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaa 32438079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 11580503 - 11580425
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| ||| |||| |||| |||||||||||||||| ||||||    
T  11580503 tattcattaaataagtctaatacttcaatttttgatggattgaatacacatgtttccataaaaacttactatctaaagt 11580425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 7933334 - 7933403
Alignment:
Q  90 ttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||| |||||||||| ||||||||| |||||| || |||||||||||| |||||||||||||| ||||||    
T  7933334 ttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatttaaagtacttaaa 7933403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 44195501 - 44195600
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||||||| ||||| ||| |||||  ||||| ||| ||||||| |||| |||||||| | ||||||||||| |||| ||||| ||||||| |||||    
T  44195501 gcactctttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgcattaaatacacatgtttttataaaaagttact 44195600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 35719302 - 35719219
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttca 131  Q
    |||||||||||||||| |||   ||| ||||||||| |||| || |||| |||||||||  |||||||||||||||||||||||||    
T  35719302 actctttaaggattttaaatt--gaaactattcattgaaaatgtctaatgcttcaatttctgatgcattaaatgcacaagttttca 35719219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 43745681 - 43745731
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||||| ||||||| |||||||| |||||||||||| ||||||||||    
T  43745681 ttcaattttcaatgcattgaatgcacacgttttcataaaaccttactattt 43745731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 40348029 - 40347944
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||||||||||  || | |||||||||  ||| ||||||| ||||| |||||||||||| ||||||||| ||| |||||||    
T  40348029 tattctttaaaaaagtcaaacagttcaatttttaatgtattaaatacacaaattttcataaaaaattactattttaagctcttaaa 40347944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 20064960 - 20065020
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||| ||||||    
T  20064960 caattttcaatgtattaaatacacaatttttcataaaacctttctatttaaagtgcttaaa 20065020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 27501846 - 27501738
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    ||||||||||| ||||||||| |||||  ||||  || |||||||  || |||||||||| | ||||||||| | || ||  ||| | ||||||||||||    
T  27501846 cactctttaagaatttttaataaagaaattatttttttaaaaagtcaaaaacttcaatttccaatgcattaatttcataaactttgacaaaaacttacta 27501747  T
Q  145 tttaaagtt 153  Q
    |||||||||    
T  27501746 tttaaagtt 27501738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 31452403 - 31452343
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||||| ||| ||||| ||||  ||||||||||||||||||||| ||||||    
T  31452403 caattttcaatgcattcaatacacaacttttattaaaaacttactatttaaagtgcttaaa 31452343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 18375058 - 18375164
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||||||||||||  |||| |||||  ||||| ||||||||||  || ||| |||||||| ||||||| | | || ||  ||| | |||||||||||||    
T  18375058 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttgacaaaaacttactat 18375157  T
Q  146 ttaaagt 152  Q
    |||||||    
T  18375158 ttaaagt 18375164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 11252796 - 11252703
Alignment:
Q  48 tctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactta 141  Q
    |||||||  |||| |||| ||||| || || ||| ||||||| || |||||||||||||||| |||| ||||||   |||||||||||| ||||    
T  11252796 tctttaaaaatttataattaagaaacttttaattgaaaaagtctactacttcaattttcgatacattgaatgcatgtgttttcataaaatctta 11252703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 31643055 - 31643124
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    ||||||||||| |||| ||||||||| |||||||| |||  |||| |||| |||||||||| | ||||||    
T  31643055 ttaaaaaagttaaataattcaatttttgatgcattgaatagacaaattttgataaaaacttgcaatttaa 31643124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 37082282 - 37082210
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||| ||||||||||  || |||||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||    
T  37082282 tattctttaaaaaagtaaaa-acttcaattttcaatgtaataaatgcacaaattttcataaaagcttaccattt 37082210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 37597533 - 37597597
Alignment:
Q  95 acttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||| | ||||||||||||||||| ||  |||||||  ||| ||||||||||| |||||    
T  37597533 acttcaatttccaatgcattaaatgcacaatttcccataaaattttattatttaaagttattaaa 37597597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 44319991 - 44319852
Alignment:
Q  20 gtcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatg 119  Q
    |||||| |||| |||| |||||   ||||||||||||  ||| ||| |||||  ||||  || ||||||||||| |||| ||||||||||||||||||||    
T  44319991 gtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaatg 44319892  T
Q  120 cacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||  |||||||| ||| |||||||||| ||||||    
T  44319891 cacaatttcccataaaaatttattatttaaagtccttaaa 44319852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 41898254 - 41898338
Alignment:
Q  50 tttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataa 134  Q
    |||||||||||| ||| ||||| || |||||| |||||||| |||| |||||||| |||||||||||||| |||||||| |||||    
T  41898254 tttaaggattttcaattaagaaacttttcattgaaaaagttcaataattcaatttccgatgcattaaatgtacaagtttccataa 41898338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 26235 - 26310
Alignment:
Q  84 aaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||||| |||| |||||||||||||||||||| |||| ||  |||||||| ||| |||||||||||||||||    
T  26235 aaaagtttaacactttaattttcgatgcattaaatgtacaatttcccataaaaatttattatttaaagttcttaaa 26310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 18926321 - 18926425
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||||||| ||||| ||||| |||  ||||| ||||||| ||  |||| |||||||||| ||||||| ||| ||||| |||||||||||| ||||     
T  18926321 gcactctttaagcattttaaatcatgaaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaacttttcataaaaagttacc 18926420  T
Q  144 attta 148  Q
    |||||    
T  18926421 attta 18926425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 26638732 - 26638840
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgca-ttaaatgcacaagttttcataaaaacttac 142  Q
    |||||||||||||||| | ||| ||||  ||||||||| |||||  |||||||||||||||| |||||| ||  || |||| |||| ||| |||||||||    
T  26638732 gcactctttaaggattctcaattaagagactattcattgaaaaaacttaatacttcaatttttgatgcatttgnatacacatgtttccat-aaaacttac 26638830  T
Q  143 tatttaaagt 152  Q
    ||||||||||    
T  26638831 tatttaaagt 26638840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 26402894 - 26402785
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||||||||||  |||| |||||  ||||| ||||||||||  || |||||||||||| || |||| | | || || |||| | |||||||||||    
T  26402894 gcactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaacttcaattttcaatacattgatttcataaattttgacaaaaacttact 26402795  T
Q  144 atttaaagtt 153  Q
    ||||||||||    
T  26402794 atttaaagtt 26402785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 40722376 - 40722469
Alignment:
Q  67 aagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaaa 160  Q
    |||||| ||||| |||| |||||  |||| |||||||||| ||||||||| | ||||| ||  |||||||||||||||||||||  ||||||||    
T  40722376 aagaatttattctttaagaaagtcaaatatttcaattttcaatgcattaattacacaaattaccataaaaacttactatttaaaactcttaaaa 40722469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 5496080 - 5495947
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||||||||| || | ||| |||||  ||||| || |||| |||||| |||| ||||||||||||||| ||||||||| ||| ||||||   |||||||    
T  5496080 actctttaaggtttctcaattaagaaattattccttgaaaatgtttaacactttaattttcgatgcattgaatgcacaactttccataaa---ttactat 5495984  T
Q  146 ttaaagttcttaa--aatgctcttaagggcactcgtta 181  Q
    | ||||| |||||  | ||||||||| |||||||||||    
T  5495983 tcaaagtccttaaagagtgctcttaa-ggcactcgtta 5495947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 43211093 - 43210963
Alignment:
Q  21 tcttgctaacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgc 120  Q
    ||||| |||| |||| |||||  ||||||||||||  |||| ||| || || ||||| ||  |||||||||||||||| ||||  | |||||||||||||    
T  43211093 tcttgttaacgagtgtcctaagggcactctttaagatttttcaattaaaaaactatttatctaaaaagtttaatactttaattc-caatgcattaaatgc 43210995  T
Q  121 acaagttttcataaaaacttactatttaaagtt 153  Q
    |||||||||| | |||| ||||||| |||||||    
T  43210994 acaagttttcgt-aaaatttactatctaaagtt 43210963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 17883442 - 17883316
Alignment:
Q  27 taacaagtgacctaaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagt 126  Q
    |||| |||| |||||  |||||||||||||||||||||| |||||  ||||  ||||||||||  || |||| ||||| | | ||||| | | || || |    
T  17883442 taacgagtgtcctaagggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcattgatttcataaat 17883343  T
Q  127 tttcataaaaacttactatttaaagtt 153  Q
    ||| | |||||||||||||||||||||    
T  17883342 tttgacaaaaacttactatttaaagtt 17883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 34681734 - 34681791
Alignment:
Q  92 aatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaa 149  Q
    |||| |||||||| | ||||||||||| |||||||||| ||||||| |||||||||||    
T  34681734 aatagttcaatttccaatgcattaaatacacaagtttttataaaaagttactatttaa 34681791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 3298235 - 3298327
Alignment:
Q  67 aagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| ||||||||| |||||| || ||| ||||||||  |||||||| |||||  |||||| |||||||| |||  || |||||||||||||    
T  3298235 aagaaactattcattgaaaaagcttcatatttcaatttctgatgcattgaatgcttaagtttccataaaaatttaacatctaaagttcttaaa 3298327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 9031720 - 9031764
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaat 118  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||    
T  9031720 tattcatttaaaaagttgaatacttcaattttcaatgcattaaat 9031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 22689040 - 22688960
Alignment:
Q  67 aagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||| ||||| ||||||||||  |  | |||||||||  ||||||||||| |||||||| ||||||||| |||||||||    
T  22689040 aagaatttattctttaaaaaagtcaatcaattcaatttttaatgcattaaatacacaagttgtcataaaaaattactattt 22688960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 28324168 - 28324104
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||| || | |||||||||| ||||||||||||||||  |||| |||||| ||||||||||    
T  28324168 aaaaagttaaacaattcaattttcaatgcattaaatgcacacatttttataaaatcttactattt 28324104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 24934545 - 24934462
Alignment:
Q  76 ttcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||||| ||||||||||||||||| | |||  ||  ||||||||||||  ||||||| | ||||| |||||| ||||||    
T  24934545 ttcattaaaaatgtttaatacttcaatttcctatgagttgcatgcacaagtttatataaaaattcactatctaaagtccttaaa 24934462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 6771884 - 6771946
Alignment:
Q  97 ttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    |||||||| ||||  ||| ||||||||| ||| |||||||| |||||||||||||| ||||||    
T  6771884 ttcaatttccgatatattgaatgcacaattttccataaaaatttactatttaaagtccttaaa 6771946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 5248745 - 5248636
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||||||||||  |||| |||||  ||||| ||||||| ||| || ||| |||||| | ||||||| | | || ||  ||| | |||||||||||    
T  5248745 gcactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttact 5248646  T
Q  144 atttaaagtt 153  Q
    ||||||||||    
T  5248645 atttaaagtt 5248636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 24557758 - 24557826
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||| ||||||||||| |||||||||||||||| || ||||  |||||||| ||| || |||||||||||    
T  24557758 tatttattaaaaaagtctaatacttcaattttcaatacattgtatgcacaa-tttacacaaaaacttact 24557826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 27156867 - 27156956
Alignment:
Q  73 ctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcac-aagttttcataaaaact-tactatttaaagttcttaaaa 160  Q
    |||| |||||||||||| ||||  ||||||||| |||| || |||||||| || |||| ||||||||| |||||| |||| |||||||||    
T  27156867 ctatccattaaaaaagtctaatgattcaatttttgatgtatcaaatgcacaaattttttataaaaactatactatctaaacttcttaaaa 27156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 28663196 - 28663135
Alignment:
Q  99 caattttcgatgcattaaatgcacaagttttcataaaaac-ttactatttaaagttcttaaa 159  Q
    |||||||| ||||||| ||| ||||| ||||||| ||||| |||||||||||||| ||||||    
T  28663196 caattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaa 28663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 31902831 - 31902746
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||| |||| |||||  |||| |||||||||| || |||| | | ||||| ||| |||||||| |||||||||||||| ||||||    
T  31902831 tattccttaagaaagtcaaatatttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtccttaaa 31902746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 19915011 - 19914947
Alignment:
Q  80 ttaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    ||||||||| | || | |||||||||| || || ||||||||||| | |||||||||||||||||    
T  19915011 ttaaaaaagataaaaatttcaattttcaatacaataaatgcacaaatattcataaaaacttacta 19914947  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 20397542 - 20397478
Alignment:
Q  83 aaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    |||||||| || | |||||||||| ||||||| ||||||||  |||||||||||  |||||||||    
T  20397542 aaaaagttaaacatttcaattttcaatgcattgaatgcacacattttcataaaatattactattt 20397478  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 10571053 - 10570954
Alignment:
Q  45 cactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttacta 144  Q
    ||||||||||||||| ||||| ||||| ||||||||| |||| ||| |||||||||||||| |||||||| |||| |||| |||  ||||||| ||||||    
T  10571053 cactctttaaggattcttaattaagaaactattcattgaaaatgttcaatacttcaatttttgatgcattgaatgaacaaatttctataaaaatttacta 10570954  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 12735563 - 12735496
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaactta 141  Q
    |||||||||||||| || | || ||||||||||||| |||||||| ||||| ||||||||||||||||    
T  12735563 tattcattaaaaaacttaattaattcaattttcgatacattaaatacacaaattttcataaaaactta 12735496  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 34530440 - 34530343
Alignment:
Q  98 tcaattttcgatgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaa--aatgctcttaagggcactcgttatcgtttccctata 194  Q
    ||||||||| ||| ||| |||| |||| ||| ||||||||| ||||||||||||| |||||  ||||||||| ||||||||||||| | ||||||||||    
T  34530440 tcaattttcaatgtattgaatgtacaattttccataaaaacatactatttaaagtgcttaaagaatgctctt-agggcactcgttaacatttccctata 34530343  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 5678581 - 5678476
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||||||||||||  || | |||||  ||||||||||||||||||||||||||||||||| || |||| |||  | || |||  ||||||| |||||||    
T  5678581 actctttaaggattcatagttaagaaattattcattaaaaaagtttaatacttcaattttcaatacattgaatatataaatttctataaaaatttactat 5678482  T
Q  146 ttaaag 151  Q
     |||||    
T  5678481 ctaaag 5678476  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 7340654 - 7340722
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  7340654 tattcattgaaaaagtataatactt-aatttttgatgcattaaatgcataagttttcacaaaaaattact 7340722  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 29988437 - 29988326
Alignment:
Q  46 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactat 145  Q
    ||||||||||| || | ||| |||||  ||||| |||||||||| ||||  ||||||||| |||| ||| ||||  ||| ||| |||||||| |||||||    
T  29988437 actctttaaggtttctcaattaagaaattattctttaaaaaagtataat--ttcaatttttgatgtattgaatgttcaattttccataaaaatttactat 29988340  T
Q  146 ttaaagttcttaaa 159  Q
    ||||||| ||||||    
T  29988339 ttaaagtccttaaa 29988326  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 32254259 - 32254194
Alignment:
Q  39 taaatgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattt 104  Q
    |||||||  ||||||||||||  |||| ||||| ||||||||||||||||||| || |||||||||    
T  32254259 taaatgctatctttaaggattcctaattaagaaactattcattaaaaaagtttcattcttcaattt 32254194  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 29407997 - 29408107
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||||||||||  |||| |||||  ||||| ||||||||||  || ||| ||||||   ||||||| | | || || |||| | |||||||||||    
T  29407997 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaatttctaatgcattgatttcataaattttgacaaaaacttact 29408096  T
Q  144 atttaaagttc 154  Q
    |||||||||||    
T  29408097 atttaaagttc 29408107  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 3441072 - 3441032
Alignment:
Q  112 attaaatgcacaagttttcataaaaacttactatttaaagt 152  Q
    ||||||| |||||||||||||||||| ||||||| ||||||    
T  3441072 attaaattcacaagttttcataaaaatttactatctaaagt 3441032  T

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Target: scaffold0027 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 122577 - 122462
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    ||||||||||||  || | ||| |||||  ||||| || ||||||||||| |||| ||||| ||||||||||||||||||| ||| |||||||| |||||    
T  122577 gcactctttaagatttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaattact 122478  T
Q  144 atttaaagttcttaaa 159  Q
    | ||||| | ||||||    
T  122477 acttaaaatccttaaa 122462  T

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Target: scaffold0633 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 5086 - 5013
Alignment:
Q  74 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttactattt 147  Q
    ||||| |||||||||||||| | |||||||| | ||||||| |||||| || ||| |||||||| |||||||||    
T  5086 tattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 5013  T

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Target: scaffold0268 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 20296 - 20245
Alignment:
Q  108 atgcattaaatgcacaagttttcataaaaacttactatttaaagttcttaaa 159  Q
    ||||||||||| ||||| ||||||||||||||||  ||||||||| ||||||    
T  20296 atgcattaaatacacaacttttcataaaaacttatcatttaaagtgcttaaa 20245  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 2982 - 3081
Alignment:
Q  44 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcataaaaacttact 143  Q
    |||||||||||| |||| |||| |||||  ||||| ||||||||  | || |||||||||| |  |||| |||||||||||  |||||||||| ||||||    
T  2982 gcactctttaagcatttctaataaagaaattattctttaaaaaaagtaaa-acttcaatttccactgcaataaatgcacaaactttcataaaatcttact 3080  T

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