View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_2 (Length: 546)
Name: NF1421_low_2
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Complemental strand, 6316544 - 6316023
Alignment:
| Q |
9 |
agcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatat |
108 |
Q |
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| T |
6316544 |
agcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatat |
6316445 |
T |
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| Q |
109 |
ggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactag |
208 |
Q |
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| T |
6316444 |
ggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactag |
6316345 |
T |
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| Q |
209 |
ctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggg |
308 |
Q |
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| T |
6316344 |
ctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggg |
6316245 |
T |
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| Q |
309 |
gttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgccgaagaaaagcccttggaaaagaaagaattgatttcatca |
408 |
Q |
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| T |
6316244 |
gttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgccaaagaaaagcccttggaaaagaaagaattgatttcacca |
6316145 |
T |
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| Q |
409 |
tacctttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagtttttatttttctactttctttagtagtgaaaatagggacag |
508 |
Q |
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| T |
6316144 |
tacctttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagtttttatttttctactttctttagtagtgaaaatagggacag |
6316045 |
T |
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| Q |
509 |
aactgattctgagtttctgttt |
530 |
Q |
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| T |
6316044 |
aactgattctgagtttctgttt |
6316023 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 55323569 - 55323506
Alignment:
| Q |
465 |
agtttttatttttctactttctttagtagtgaaaatagggacagaactgattctgagtttctgttt |
530 |
Q |
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| T |
55323569 |
agtttttatttttctactttctttagtagcaaagatgggggcagaactgat--tgagtttctgttt |
55323506 |
T |
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