View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_3 (Length: 391)
Name: NF1421_low_3
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 35073395 - 35073032
Alignment:
| Q |
12 |
atgaaacagtaaccaattgggtaaggtaatatacttatcttggtgaagtttggtgtgtgtgagcttaaataaatcgtctccttcggcgctcaaactcaaa |
111 |
Q |
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| T |
35073395 |
atgaaacagtaaccaattcggtaaggtaatatacttatcttggtgaagtttggtgtgtgtgagcttaaataaatcgtctccttcggcgctcaaactcaaa |
35073296 |
T |
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| Q |
112 |
tctaaacagaagagattagaaaaaaggttannnnnnnnnnnnnnnaggtggtgtgtgaaattatgaatgtttattttcatgcttgcttcgttaacacgta |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073295 |
tctaaacagaagagattagaaaaaaggttatttttatttttttgtaggtggtgtatgaaattatgaatgtttattttcatgcttgcttcgttaacacgta |
35073196 |
T |
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| Q |
212 |
tcacgtgttatgatattgacacgtggagatcaaacaaggttttagttctatatgacacgtgtacgcttgtaggttgttatgcagtcattacctatttttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073195 |
tcacgtgttatgatattgacacgtggagatcaaacaaggtttaa-ttctatatgacacgtgtacgcttgtaggttgttatgcagtcattacctatttttg |
35073097 |
T |
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| Q |
312 |
tttctagaaactagaactacatctagaacggttgattaaattttagagaaaataaaatttggatg |
376 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073096 |
tttctagaaacaagaactacatctagaacggttgattaaattttagagaaaataaaatttggatg |
35073032 |
T |
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