View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1421_low_4 (Length: 369)

Name: NF1421_low_4
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1421_low_4
NF1421_low_4
[»] chr8 (12 HSPs)
chr8 (19-234)||(16784150-16784362)
chr8 (19-61)||(12176331-12176373)
chr8 (19-61)||(12420759-12420801)
chr8 (19-61)||(23472504-23472546)
chr8 (19-61)||(38498375-38498417)
chr8 (19-61)||(39590001-39590043)
chr8 (18-51)||(30774125-30774158)
chr8 (19-51)||(10078304-10078336)
chr8 (19-51)||(16645543-16645575)
chr8 (19-50)||(3210930-3210961)
chr8 (19-48)||(14371629-14371658)
chr8 (18-50)||(44873913-44873945)
[»] chr3 (13 HSPs)
chr3 (18-61)||(21395988-21396031)
chr3 (18-61)||(54411919-54411962)
chr3 (19-61)||(34673596-34673638)
chr3 (19-51)||(42092807-42092839)
chr3 (19-51)||(50090958-50090990)
chr3 (19-51)||(54160388-54160420)
chr3 (19-50)||(27027348-27027379)
chr3 (18-51)||(13700377-13700410)
chr3 (19-48)||(39328415-39328444)
chr3 (19-51)||(3283400-3283432)
chr3 (19-51)||(6125770-6125802)
chr3 (19-51)||(36418713-36418745)
chr3 (19-51)||(52089032-52089064)
[»] chr5 (11 HSPs)
chr5 (19-61)||(38758747-38758789)
chr5 (19-61)||(19323827-19323870)
chr5 (19-61)||(21913873-21913915)
chr5 (19-51)||(31056499-31056531)
chr5 (23-61)||(16490786-16490825)
chr5 (19-50)||(27365716-27365747)
chr5 (17-51)||(16994264-16994298)
chr5 (28-61)||(19994555-19994588)
chr5 (19-51)||(9741725-9741757)
chr5 (19-51)||(16273692-16273724)
chr5 (19-51)||(23204376-23204408)
[»] chr1 (11 HSPs)
chr1 (19-61)||(25825423-25825465)
chr1 (19-62)||(1406698-1406741)
chr1 (19-61)||(2964987-2965029)
chr1 (19-51)||(1469758-1469790)
chr1 (18-49)||(14463321-14463352)
chr1 (18-49)||(30819637-30819668)
chr1 (19-61)||(7336183-7336225)
chr1 (19-49)||(9005430-9005460)
chr1 (19-61)||(26284570-26284612)
chr1 (18-51)||(30414226-30414259)
chr1 (19-51)||(44720065-44720097)
[»] chr4 (12 HSPs)
chr4 (19-60)||(54158107-54158148)
chr4 (18-61)||(20503422-20503465)
chr4 (19-61)||(6137249-6137291)
chr4 (21-61)||(7645950-7645990)
chr4 (19-51)||(34728348-34728380)
chr4 (19-51)||(43837818-43837850)
chr4 (18-61)||(51682686-51682730)
chr4 (19-61)||(32090091-32090134)
chr4 (19-61)||(13386973-13387015)
chr4 (19-57)||(48860851-48860889)
chr4 (19-61)||(51702446-51702488)
chr4 (19-51)||(20835706-20835738)
[»] chr2 (11 HSPs)
chr2 (18-57)||(25880569-25880608)
chr2 (19-61)||(29471756-29471799)
chr2 (18-51)||(27097033-27097066)
chr2 (19-51)||(10862576-10862608)
chr2 (19-51)||(16719849-16719881)
chr2 (19-50)||(18924661-18924692)
chr2 (18-61)||(25810526-25810569)
chr2 (19-61)||(34450305-34450347)
chr2 (19-52)||(1750040-1750073)
chr2 (19-51)||(14747418-14747450)
chr2 (19-51)||(33740234-33740266)
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-61)||(35043-35085)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-61)||(231254-231296)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-61)||(392395-392433)
[»] chr7 (15 HSPs)
chr7 (19-61)||(48227355-48227397)
chr7 (19-61)||(48625008-48625050)
chr7 (18-51)||(43077616-43077649)
chr7 (19-51)||(32392300-32392332)
chr7 (19-50)||(24251831-24251862)
chr7 (23-61)||(9522591-9522629)
chr7 (19-61)||(38368149-38368191)
chr7 (18-51)||(27130996-27131029)
chr7 (28-61)||(41585997-41586030)
chr7 (18-51)||(45099970-45100003)
chr7 (19-51)||(3203415-3203447)
chr7 (19-51)||(5995177-5995209)
chr7 (22-50)||(28059351-28059379)
chr7 (19-51)||(31953158-31953190)
chr7 (19-51)||(42373582-42373614)
[»] scaffold0093 (1 HSPs)
scaffold0093 (19-60)||(9142-9183)
[»] chr6 (2 HSPs)
chr6 (19-61)||(19143618-19143661)
chr6 (21-61)||(19104414-19104455)
[»] scaffold0112 (1 HSPs)
scaffold0112 (19-61)||(35962-36004)
[»] scaffold0086 (1 HSPs)
scaffold0086 (23-61)||(8595-8633)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 16784362 - 16784150
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatattcaaataccttagttagggtaggacagnnnnnnntattcaaatgtatctttatttta 118  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||       ||||||||| |||||||||||||    
T  16784362 acaccttcataaaaggtgtcttctagcaaaactttatatat--tcaaataccttagttagggtaggacagaaaaaaatattcaaatatatctttatttta 16784265  T
Q  119 tgatagttatacgagtattttttagagacaagaagattgtattgtatgtaactaacactaaaaaagaccattaaattgataaaaattgggaattttgacc 218  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  16784264 tgatagttataccagtactttttagagacaagaagattgtattgtatgtaactaatactaaaaaa-accattaaattgataaaaattgggaattttgacc 16784166  T
Q  219 acgaaactatttcaag 234  Q
    ||||||||||||||||    
T  16784165 acgaaactatttcaag 16784150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12176331 - 12176373
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  12176331 acaccttcataaaaggtgtcttctagcaaaaccctatatatat 12176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12420759 - 12420801
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  12420759 acaccttcataaaaggtgtcttctagcaaaaccctatatatat 12420801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 23472546 - 23472504
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  23472546 acaccttcataaaaggtgtcttctagcaaaaccctatatatat 23472504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 38498375 - 38498417
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38498375 acaccttcataaaaggtgtcttctagcaaaaccatatatatat 38498417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 39590001 - 39590043
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  39590001 acaccttcataaaaggtgtcttctagcaaaaccctatatatat 39590043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30774158 - 30774125
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  30774158 aacaccttcataaaaggtgtcttctagcaaaacc 30774125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 10078336 - 10078304
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  10078336 acaccttcataaaaggtgtcttctagcaaaacc 10078304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 16645543 - 16645575
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  16645543 acaccttcataaaaggtgtcttctagcaaaacc 16645575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 3210930 - 3210961
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  3210930 acaccttcataaaaggtgtcttctagcaaaac 3210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 14371629 - 14371658
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaa 48  Q
    ||||||||||||||||||||||||||||||    
T  14371629 acaccttcataaaaggtgtcttctagcaaa 14371658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 44873945 - 44873913
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaac 50  Q
    |||||||||||||||||||||||||| ||||||    
T  44873945 aacaccttcataaaaggtgtcttctaacaaaac 44873913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 21395988 - 21396031
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  21395988 aacaccttcataaaaggtgtcttctagcaaaaccctatatatat 21396031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 54411919 - 54411962
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  54411919 aacaccttcataaaaggtgtcttctagcaaaaccatatatatat 54411962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 34673596 - 34673638
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  34673596 acaccttcataaaaggtgtcttctagcaaagccctatatatat 34673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 42092839 - 42092807
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  42092839 acaccttcataaaaggtgtcttctagcaaaacc 42092807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 50090958 - 50090990
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  50090958 acaccttcataaaaggtgtcttctagcaaaacc 50090990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 54160420 - 54160388
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  54160420 acaccttcataaaaggtgtcttctagcaaaacc 54160388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 27027348 - 27027379
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  27027348 acaccttcataaaaggtgtcttctagcaaaac 27027379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 13700377 - 13700410
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  13700377 aacaccttcataaaatgtgtcttctagcaaaacc 13700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 39328444 - 39328415
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaa 48  Q
    ||||||||||||||||||||||||||||||    
T  39328444 acaccttcataaaaggtgtcttctagcaaa 39328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 3283400 - 3283432
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||| ||||||||||||||||||    
T  3283400 acaccttcataaaatgtgtcttctagcaaaacc 3283432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 6125802 - 6125770
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||| ||||||||||||||||||    
T  6125802 acaccttcataaaatgtgtcttctagcaaaacc 6125770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 36418745 - 36418713
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||| ||||||||||||||||||||||||||||    
T  36418745 acactttcataaaaggtgtcttctagcaaaacc 36418713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 52089064 - 52089032
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||| ||||||||||    
T  52089064 acaccttcataaaaggtgtcttatagcaaaacc 52089032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 38758747 - 38758789
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  38758747 acaccttcataaaatgtgtcttctagcaaaaccttatatatat 38758789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 19323827 - 19323870
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  19323827 acaccttcataaaaggtgtcttctagcaaaacctatatatatat 19323870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 21913873 - 21913915
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  21913873 acaccttcataaagggtgtcttctagcaaaaccctatatatat 21913915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 31056499 - 31056531
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  31056499 acaccttcataaaaggtgtcttctagcaaaacc 31056531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 16490786 - 16490825
Alignment:
Q  23 cttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  16490786 cttcataaaaggtgtcttctagcaaaacctatatatatat 16490825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 27365747 - 27365716
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  27365747 acaccttcataaaaggtgtcttctagcaaaac 27365716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 16994264 - 16994298
Alignment:
Q  17 caacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  16994264 caacaccttcataaaatgtgtcttctagcaaaacc 16994298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 19994588 - 19994555
Alignment:
Q  28 taaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||| ||||||||||||||||||||||||||||    
T  19994588 taaaatgtgtcttctagcaaaaccttatatatat 19994555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 9741757 - 9741725
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||| ||||||||||||||||||    
T  9741757 acaccttcataaaatgtgtcttctagcaaaacc 9741725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 16273692 - 16273724
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||| |||||||||||||||||||    
T  16273692 acaccttcataaagggtgtcttctagcaaaacc 16273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 23204408 - 23204376
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||| |||||||||||||||||    
T  23204408 acaccttcataaaagatgtcttctagcaaaacc 23204376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 25825423 - 25825465
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  25825423 acaccttcataaaaggtgtcttctaacaaaaccttatatatat 25825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 1406741 - 1406698
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatatt 62  Q
    |||||||||||||| |||||||||||||||||| ||||||||||    
T  1406741 acaccttcataaaatgtgtcttctagcaaaaccctatatatatt 1406698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 2964987 - 2965029
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  2964987 acaccttcataaacggtgtcttctagcaaaaccatatatatat 2965029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 1469758 - 1469790
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  1469758 acaccttcataaaaggtgtcttctagcaaaacc 1469790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 14463352 - 14463321
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  14463352 aacaccttcataaaaggtgtcttctagcaaaa 14463321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 30819637 - 30819668
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  30819637 aacaccttcataaaaggtgtcttctagcaaaa 30819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 7336183 - 7336225
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||| |||||| |||||||||||||||||| |||||||||    
T  7336183 acaccttaataaaatgtgtcttctagcaaaaccctatatatat 7336225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 9005460 - 9005430
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaa 49  Q
    |||||||||||||||||||||||||||||||    
T  9005460 acaccttcataaaaggtgtcttctagcaaaa 9005430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 26284570 - 26284612
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||| ||||||||||||| |||||||| |||||||||    
T  26284570 acaccttcatgaaaggtgtcttcttgcaaaaccatatatatat 26284612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 30414226 - 30414259
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||| |||||||||||||    
T  30414226 aacaccttcataaaaggtgtattctagcaaaacc 30414259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 44720097 - 44720065
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||||||||||| |||||||    
T  44720097 acaccttcataaaaggtgtcttctaacaaaacc 44720065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 54158148 - 54158107
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatata 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  54158148 acaccttcataaaaggtgtcttctagcaaaaccctatatata 54158107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 20503465 - 20503422
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  20503465 aacaccttcataaaaggtgccttctagcaaaaccctatatatat 20503422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 6137291 - 6137249
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  6137291 acacattcataaaaggtgtcttctagcaaaaccctatatatat 6137249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 7645950 - 7645990
Alignment:
Q  21 accttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  7645950 accttcataaaaggtgtcttcaagcaaaaccatatatatat 7645990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 34728348 - 34728380
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  34728348 acaccttcataaaaggtgtcttctagcaaaacc 34728380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 43837818 - 43837850
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  43837818 acaccttcataaaaggtgtcttctagcaaaacc 43837850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 51682686 - 51682730
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  51682686 aacaccttcataaaaggtgttttctagcaaaacctatatatatat 51682730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 32090091 - 32090134
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  32090091 acaccttcataaaagatgtcttctagcaaaacctatatatatat 32090134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 13387015 - 13386973
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||| |||||| |||||||||||||||||| |||||||||    
T  13387015 acacctttataaaatgtgtcttctagcaaaaccctatatatat 13386973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 48860851 - 48860889
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatat 57  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  48860851 acacctttataaaaggtgtcttctagcaaaacctaatat 48860889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 51702488 - 51702446
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||| ||||||| |||||||||||||||||||| |||||||||    
T  51702488 acactttcataagaggtgtcttctagcaaaaccctatatatat 51702446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 20835738 - 20835706
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||| ||||||||||    
T  20835738 acaccttcataaaaggtgtcttatagcaaaacc 20835706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 25880608 - 25880569
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaaccttatat 57  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  25880608 aacaccttcataaaaagtgtcttctagcaaaaccttatat 25880569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 29471756 - 29471799
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  29471756 acaccttcataaaaggtgtcttctagcaaaacctatatatatat 29471799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 27097066 - 27097033
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  27097066 aacaccttcataaaaggtgtcttctagcaaaacc 27097033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 10862608 - 10862576
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  10862608 acaccttcataaaaggtgtcttctagcaaaacc 10862576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 16719849 - 16719881
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  16719849 acaccttcataaaaggtgtcttctagcaaaacc 16719881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 18924661 - 18924692
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  18924661 acaccttcataaaaggtgtcttctagcaaaac 18924692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 25810526 - 25810569
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||| |||||||||||||||  ||||||||    
T  25810526 aacaccttcataaaaggtatcttctagcaaaaccacatatatat 25810569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 34450347 - 34450305
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||| |||||||||||||||| | |||||||||    
T  34450347 acaccttcataaaatgtgtcttctagcaaaatcatatatatat 34450305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1750040 - 1750073
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacct 52  Q
    |||||||||||||| |||||||||||||||||||    
T  1750040 acaccttcataaaatgtgtcttctagcaaaacct 1750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 14747418 - 14747450
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||| |||||||||||||||||    
T  14747418 acaccttcataaaagatgtcttctagcaaaacc 14747450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33740266 - 33740234
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||| ||||||    
T  33740266 acaccttcataaaaggtgtcttctagtaaaacc 33740234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 35085 - 35043
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  35085 acaccttcataaaaggtgtcttctagcaaaaccctttatatat 35043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 231254 - 231296
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  231254 acaccttcataaaatgtgtcttctagcaaaaccatatatatat 231296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 392433 - 392395
Alignment:
Q  23 cttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  392433 cttcataaaaggtgtcttctagcaaaaccctatatatat 392395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 48227355 - 48227397
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  48227355 acaccttcataaaaggtgtcttccagcaaaaccctatatatat 48227397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 48625008 - 48625050
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  48625008 acaccttcataaaaggtgtcttatagcaaaaccctatatatat 48625050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 43077616 - 43077649
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  43077616 aacaccttcataaaaggtgtcttctagcaaaacc 43077649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 32392300 - 32392332
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||||||||||||||||||||||    
T  32392300 acaccttcataaaaggtgtcttctagcaaaacc 32392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 24251862 - 24251831
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  24251862 acaccttcataaaaggtgtcttctagcaaaac 24251831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 9522591 - 9522629
Alignment:
Q  23 cttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  9522591 cttcataaaatgtgtcttctagcaaaaccatatatatat 9522629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 38368191 - 38368149
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||| ||||||||||||||||||||||| |||| |||||||||    
T  38368191 acacattcataaaaggtgtcttctagcataaccctatatatat 38368149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 27131029 - 27130996
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||||||||||||| |||||||||||||||||||    
T  27131029 aacaccttcataaagggtgtcttctagcaaaacc 27130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 41585997 - 41586030
Alignment:
Q  28 taaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||||||||||||||| |||||||||    
T  41585997 taaaaggtgtcttctagcaaaaccctatatatat 41586030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 45100003 - 45099970
Alignment:
Q  18 aacaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  45100003 aacaccttcataaaatgtgtcttctagcaaaacc 45099970  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 3203415 - 3203447
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||| |||||||||||||||    
T  3203415 acaccttcataaaaggtatcttctagcaaaacc 3203447  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5995177 - 5995209
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||| ||||||||||||||||||||||||||||    
T  5995177 acactttcataaaaggtgtcttctagcaaaacc 5995209  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 28059351 - 28059379
Alignment:
Q  22 ccttcataaaaggtgtcttctagcaaaac 50  Q
    |||||||||||||||||||||||||||||    
T  28059351 ccttcataaaaggtgtcttctagcaaaac 28059379  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 31953190 - 31953158
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    ||||||||||||||||||| |||||||||||||    
T  31953190 acaccttcataaaaggtgtgttctagcaaaacc 31953158  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 42373582 - 42373614
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacc 51  Q
    |||| ||||||||||||||||||||||||||||    
T  42373582 acacattcataaaaggtgtcttctagcaaaacc 42373614  T

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Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 9183 - 9142
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatata 60  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  9183 acaccttcataaaaggtgtcttctagcaataccatatatata 9142  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 19143661 - 19143618
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  19143661 acaccttcataaaaggtatcttctagcaaaacctatatatatat 19143618  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 19104414 - 19104455
Alignment:
Q  21 accttcataaaaggtgtcttctagcaaaacct-tatatatat 61  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  19104414 accttcataaaaggtgtcttctagcaaaatctatatatatat 19104455  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 35962 - 36004
Alignment:
Q  19 acaccttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    ||||||||||||||| ||||||||||||||||  |||||||||    
T  35962 acaccttcataaaagttgtcttctagcaaaactatatatatat 36004  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 8595 - 8633
Alignment:
Q  23 cttcataaaaggtgtcttctagcaaaaccttatatatat 61  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  8595 cttcataaaaggcgtcttctagcaaaaccatatatatat 8633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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