View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_5 (Length: 345)
Name: NF1421_low_5
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 5201560 - 5201241
Alignment:
| Q |
20 |
cgtcaaatttggaaattcggggttccaaccaaggtgaacacttttgtgtggaaggccttgctagaccggattccaaatagggtgaatttggagataagga |
119 |
Q |
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| T |
5201560 |
cgtcaaatttgaaaatccggggttccaaccaagatgagcgcttttgtgtggaagaccttgctagaccaaatttcaaatagggtgaatttggagataagga |
5201461 |
T |
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| Q |
120 |
gttgtttatctatggatgttagccataattgtgtttggtgtc-----gttcccaaatctacttcgcatattttcctccaatgcgatatggctagaaatat |
214 |
Q |
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| T |
5201460 |
gttgtttacctatggatgttagccataattgtgtttggtgtgcgacggttcccgaatctacttcgcatattttcctccattgcgatatggctagaaatat |
5201361 |
T |
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| Q |
215 |
ttggcttaacttgatggtgtggttggattcgaattttgtaatgccacccaacttattcgtccattgggaatgttgggtgatgggtaatattaataagaaa |
314 |
Q |
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| T |
5201360 |
ttggcttaacttgatggtgtggttggatttgaattttgtaatgccacccaacttattcgtccattgggaatgttgggcgatgggtaatattaataagaaa |
5201261 |
T |
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| Q |
315 |
atccgtaacggtttgagaat |
334 |
Q |
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| T |
5201260 |
atccgtaagggtttgagaat |
5201241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 2031272 - 2030951
Alignment:
| Q |
20 |
cgtcaaatttggaaattcggggttccaaccaaggtgaacacttttgtgtggaaggccttgctagaccggattccaaatagggtgaatttggagataagga |
119 |
Q |
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| T |
2031272 |
cgtcaaatttggaagtctggggttccaactaaggtgagtgcttttatgtggaaggctcttctagaccggattccaaatcgggtgaatttggagaaaagaa |
2031173 |
T |
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| Q |
120 |
gttgtttatctatggatgttagccataattgtgtttggtgtcg-----ttcccaaatctacttcgcatattttcctccaatgcgatatggctagaaatat |
214 |
Q |
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| T |
2031172 |
gttgtttaccaacggatgttagtcatgaat-tgtttggtgtgtgatgatacccgaatccacttcacatcttttcctccattgtgatatggcaagaaatat |
2031074 |
T |
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| Q |
215 |
ttggcttaac---ttgatggtgtggttggattcgaattttgtaatgccacccaacttattcgtccattgggaatgttgggtgatgggtaatattaataag |
311 |
Q |
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| T |
2031073 |
ttgacttaataatttgatgaagtggttggatttgaattttgtaatgccacccaatttatttatccattgggagtgttgggcggggggtgctcttaataag |
2030974 |
T |
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| Q |
312 |
aaaatccgtaacggtttgagaat |
334 |
Q |
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| T |
2030973 |
aagatccggaagggtttgagaat |
2030951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 36251044 - 36251197
Alignment:
| Q |
157 |
gtgtcgttcccaaatctacttcgcatattttcctccaatgcgatatggctagaaatatttggcttaacttgatggtgtggttggattcgaattttgtaat |
256 |
Q |
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| T |
36251044 |
gtgtcgctcccgaatcttcttcgcatctttttcttccttgtgatatggcgaagaatatttggttaaacttaatgttgtggttagatttgaattttgtaat |
36251143 |
T |
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| Q |
257 |
gccacccaacttattcgtccattgggaatgttgggtgatgggtaatattaataa |
310 |
Q |
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| T |
36251144 |
gccaccaaatttgtatgtcctttgggagtgttgggtggggggtcattttaataa |
36251197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 39844906 - 39844995
Alignment:
| Q |
201 |
atggctagaaatatttggcttaacttgatggtgtggttggattcgaattttgtaatgccacccaacttattcgtccattgggaatgttgg |
290 |
Q |
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| T |
39844906 |
atggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaatgttgg |
39844995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 1547630 - 1547719
Alignment:
| Q |
201 |
atggctagaaatatttggcttaacttgatggtgtggttggattcgaattttgtaatgccacccaacttattcgtccattgggaatgttgg |
290 |
Q |
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| T |
1547630 |
atggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaatgttgg |
1547719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 22350144 - 22350217
Alignment:
| Q |
41 |
gttccaaccaaggtgaacacttttgtgtggaaggccttgctagaccggattccaaatagggtgaatttggagat |
114 |
Q |
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| T |
22350144 |
gttccatctaaggtgaccgcttttgtgtggaaggcatttttagaccgcattccaactagattgaatttggagat |
22350217 |
T |
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