View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_7 (Length: 270)
Name: NF1421_low_7
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 1549260 - 1549448
Alignment:
| Q |
14 |
gaatcacacaagttaagtagcaattgcgggttcgaatctgcgccccaacagatcaaatgtctctgcaactaccaattgtgttgtagacataactaacttt |
113 |
Q |
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| T |
1549260 |
gaatcacacaagttaagtagcaattgcgggttcgaatctgcgccccaacagatcaaatgtctatgcaactaccaattgtgttgtagacataactaacttt |
1549359 |
T |
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| Q |
114 |
tatgtctaatattttaataactaaaagaacaactaattagtgtaacttactaagtagtgtaactaattagtataactaacttttatatg |
202 |
Q |
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| T |
1549360 |
tatgtctaatattttaataactaaaagaacaactaattagtgtaacttactaagtagtgtaactaattagtataactaacttttatatg |
1549448 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 30625116 - 30625155
Alignment:
| Q |
43 |
gttcgaatctgcgccccaacagatcaaatgtctctgcaac |
82 |
Q |
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| T |
30625116 |
gttcgaatctgcgctccaacatatcaaatgtctctgcaac |
30625155 |
T |
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