View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1421_low_8 (Length: 265)
Name: NF1421_low_8
Description: NF1421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1421_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 30361039 - 30360797
Alignment:
| Q |
12 |
agcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttccaaagaaattttaacaa |
111 |
Q |
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| T |
30361039 |
agcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttcaaaagaaatttaaacaa |
30360940 |
T |
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| Q |
112 |
ccaggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggaccca |
211 |
Q |
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| T |
30360939 |
ccaggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggaccca |
30360840 |
T |
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| Q |
212 |
atcccagttccagagaaggtccgtaaaccccttacacaggttc |
254 |
Q |
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| T |
30360839 |
atcccagttccagagaaggtccgcaaaccccttacacaggttc |
30360797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 19916442 - 19916201
Alignment:
| Q |
5 |
gagaaggagcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagacttttttt-aagcatgcgtattttcttccaaagaaat |
103 |
Q |
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| T |
19916442 |
gagaagaagcacagatgagaaaatttaaggcactgccagta--aaaagagtgagaattcaggacttttttttaagcatgcgtactttctttgaaagaaat |
19916345 |
T |
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| Q |
104 |
tttaacaaccaggacnnnnnnnn-cttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgc |
202 |
Q |
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| T |
19916344 |
ttaaac---caatactttttttatcctttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgc |
19916248 |
T |
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| Q |
203 |
agggacccaatcccagttccagagaaggtccgtaaaccccttacaca |
249 |
Q |
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| T |
19916247 |
agggacccaatcccagttccagagaaggtccgcaaaccccttacaca |
19916201 |
T |
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