View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-1 (Length: 395)
Name: NF1422-Insertion-1
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 10672831 - 10672701
Alignment:
| Q |
30 |
cctataacacgtaaaaattgatttacaaactcactaatatcttccattgctttgctccattagcttgttcacaaataataggctccattcccatagctct |
129 |
Q |
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| T |
10672831 |
cctataacacgtaaaaattgatttacaaactcactaatatcttccattgctttgctccattagcttgttcacaaataataggctccattcccatagctct |
10672732 |
T |
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| Q |
130 |
tgaatataacaacaaaacagtgattgttttt |
160 |
Q |
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| T |
10672731 |
tgaatataacaacaaaacagtgatttttttt |
10672701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 10676405 - 10676314
Alignment:
| Q |
68 |
atcttccattgctttgctccattagcttgttcacaaataataggctccattcccatagctcttgaatataacaacaaa--acagtgattgttttt |
160 |
Q |
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| T |
10676405 |
atcttccattgctttgctccattagcttctccacaaataa---gttccattcccatagctcttgaatacaacaacaaaccatagtgattgttttt |
10676314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 22721011 - 22721067
Alignment:
| Q |
289 |
aatttccctccaagaaagaggaaaatctggccttttttgcataataaaacaaaaccca |
346 |
Q |
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| T |
22721011 |
aatttccctctaagaaagaggaaaatcaggctttttttgcacaa-aaaacaaaaccca |
22721067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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