View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1422-Insertion-11 (Length: 906)
Name: NF1422-Insertion-11
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-11 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 8401167 - 8401562
Alignment:
| Q |
8 |
gggtccacatttgttggtcaaggttcattggcatctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401167 |
gggtccacatttgttggtcaaggttcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
8401266 |
T |
|
| Q |
108 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401267 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
8401366 |
T |
|
| Q |
208 |
agaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgtt |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401367 |
agaaaatggagatttatttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgtt |
8401466 |
T |
|
| Q |
308 |
gagggaactacagttgatgaatttgctagcaaacttttctaagatttgtatttattttttcttgatctaacttaacaattcttgattcaattgtgat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8401467 |
gagggaactacagttgatgaatttgctagcaaacttttctaag-tctttagtttttttttcttgatctaacttaacaattcttgattcaattgtgat |
8401562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 8368243 - 8367848
Alignment:
| Q |
8 |
gggtccacatttgttggtcaaggttcattggcatctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8368243 |
gggtccacatttgttggtcaaggttcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
8368144 |
T |
|
| Q |
108 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8368143 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
8368044 |
T |
|
| Q |
208 |
agaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8368043 |
agaaaatggagatttgtttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgtt |
8367944 |
T |
|
| Q |
308 |
gagggaactacagttgatgaatttgctagcaaacttttctaagatttgtatttattttttcttgatctaacttaacaattc-ttgattcaattgtgat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | || || ||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8367943 |
gagggaactacagttgatgaatttgctagcaaacttttctaag-tctttagtt-ttttttcttgatctaacttaacaattctttgattcaattgtgat |
8367848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 8422744 - 8423144
Alignment:
| Q |
8 |
gggtccacatttgttggtcaaggttcattggcatctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8422744 |
gggtccacatttgttggtcaaggttcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaag |
8422843 |
T |
|
| Q |
108 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8422844 |
ttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaag |
8422943 |
T |
|
| Q |
208 |
agaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
8422944 |
agaaaatggagatttgtttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctataaaatcagcttactctcgtgtt |
8423043 |
T |
|
| Q |
308 |
gagggaactacagttgatgaatttgctagcaaacttttctaa--gatttgtattta-ttttttcttgatctaacttaacaattc-ttgattcaattgtga |
403 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||| | ||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
8423044 |
gagggaactatagttgatgaatttgcaagcaagcttttctaattgtttttagtttacttttttcttgatctaacttaacaattctttgattcaattatga |
8423143 |
T |
|
| Q |
404 |
t |
404 |
Q |
| |
|
| |
|
|
| T |
8423144 |
t |
8423144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 553 - 801
Target Start/End: Original strand, 8401776 - 8402015
Alignment:
| Q |
553 |
atcaattaccaactattcattagtccttggtgttgacattttagacagcaactagttgttgattactaattataaaagtatagttagtaagtagtccttg |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8401776 |
atcaattaccaactattcattagtccttggtgttgacattttagacaccaactagttgttgattactaattataaaagtatagttagtaagtagtccttg |
8401875 |
T |
|
| Q |
653 |
tcgtcgatctagccat---ttaggacaaataaccattcatccaattagcctgctaattaagctttggactgggtctcagtactttaattttataattgat |
749 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8401876 |
tcgtcgatctagccatttattaggacaaatgaccattcatccaattagcctgctaattaagctttcgactgggtctcagtactttaattttataatt--- |
8401972 |
T |
|
| Q |
750 |
agatagatagatagatttgttacttgtgcatataattaatgcatgcctcttt |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8401973 |
---------gatagatttgttacttgtgcatataattaatgcatgcctcttt |
8402015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 398 - 529
Target Start/End: Original strand, 8401585 - 8401716
Alignment:
| Q |
398 |
ttgtgatattttttgcgcctgtgtgattgtagaaaaattaaattcaaataatcaccaaccaatattattaaaatttgtgcgccttttgaataagtaaaat |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
8401585 |
ttgtgatattttttgcgcctgtgtgattgtagaaaaattaaattcaaataatcaccgaccaatattattaaattttgtgcgccttttgaataagtaagat |
8401684 |
T |
|
| Q |
498 |
ttttcgtatcttagattagtgaccaactagcc |
529 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
8401685 |
ttttcgtatcttagattagtcaccaactagcc |
8401716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 8411934 - 8411863
Alignment:
| Q |
66 |
cattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
137 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8411934 |
cattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8411863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 8434032 - 8433961
Alignment:
| Q |
66 |
cattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
137 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8434032 |
cattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8433961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 8376053 - 8376156
Alignment:
| Q |
47 |
gttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggat |
146 |
Q |
| |
|
|||||| || ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| | |
|
|
| T |
8376053 |
gttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtt |
8376152 |
T |
|
| Q |
147 |
tctt |
150 |
Q |
| |
|
|||| |
|
|
| T |
8376153 |
tctt |
8376156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 8417024 - 8416952
Alignment:
| Q |
57 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgta |
129 |
Q |
| |
|
||||||| |||||||| |||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
8417024 |
tggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 8431070 - 8431014
Alignment:
| Q |
81 |
ttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8431070 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8431014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 8405823 - 8405743
Alignment:
| Q |
57 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
137 |
Q |
| |
|
||||||| |||||||| |||| | ||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8405823 |
tggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtatagagctt |
8405743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 8403856 - 8403777
Alignment:
| Q |
68 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
147 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
8403856 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
8403777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 8395749 - 8395829
Alignment:
| Q |
57 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
137 |
Q |
| |
|
||||||| |||||||| |||| | ||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
8395749 |
tggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtatagagctt |
8395829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 55336151 - 55336092
Alignment:
| Q |
88 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggatt |
55336092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 55330720 - 55330659
Alignment:
| Q |
87 |
cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
148 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
55330720 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
55330659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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