View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-13 (Length: 534)

Name: NF1422-Insertion-13
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-13
NF1422-Insertion-13
[»] chr2 (3 HSPs)
chr2 (122-534)||(37570824-37571231)
chr2 (8-59)||(37570710-37570761)
chr2 (301-379)||(11862313-11862390)
[»] chr8 (2 HSPs)
chr8 (302-387)||(4187381-4187465)
chr8 (302-354)||(28452042-28452094)
[»] chr1 (5 HSPs)
chr1 (295-385)||(4408301-4408390)
chr1 (302-387)||(4080379-4080463)
chr1 (291-371)||(47763150-47763229)
chr1 (291-335)||(23532837-23532881)
chr1 (291-379)||(32893738-32893825)
[»] chr6 (1 HSPs)
chr6 (316-381)||(20500415-20500479)
[»] scaffold0100 (1 HSPs)
scaffold0100 (338-386)||(39230-39277)
[»] chr7 (1 HSPs)
chr7 (309-379)||(3371436-3371505)
[»] chr4 (2 HSPs)
chr4 (291-364)||(26635915-26635987)
chr4 (302-354)||(56094300-56094352)
[»] chr5 (2 HSPs)
chr5 (291-354)||(34367200-34367263)
chr5 (293-351)||(15089193-15089248)
[»] chr3 (1 HSPs)
chr3 (291-355)||(29491016-29491080)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 122 - 534
Target Start/End: Original strand, 37570824 - 37571231
Alignment:
Q  122 attggtcttctatgaacaagttagtcctttnnnnnnnttctaacaaatattattctcaattttgatccaactttcttagaaagtgtttaagtatccattt 221  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  37570824 attggtcttctatgaacaagttagtcctttaaaaaaattctaacaaatattattctcaattt-gatccaactttgttagaaagtgtttacgtatccattt 37570922  T
Q  222 aattaacattaaatcggaaggtccaaaaaatatttatgacatcaattatgattaagtacatttcatttctattgtttcacaatttaatcctaattttata 321  Q
    ||    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37570923 aa----cattaaattggaaggtccaaaaaatatttatgacatcaaatatgattaagtacatttcatttctattgtttcacaatctaatcctaattttata 37571018  T
Q  322 gataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagaccccgattaatacactatgaaccatagttttaagac 421  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37571019 gataaacatttcattcacaacattataaatcaaagtaattggttgattttgtttcaaactaagaccccgattaatacactatgaaccatagttttaagac 37571118  T
Q  422 ggtgaatttgaaccaacaataatcatctccataaacactttttgactgaatttcatgattataaagaataattgtgcatatattatatgacttaaatgat 521  Q
    ||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37571119 ggtgaatttgaaccaacgataatcttctccataaatactttttaactgaatttcatgattataaagaataattgtgcatatattatatgacttaagtgat 37571218  T
Q  522 attagatgttcag 534  Q
    |||||||||||||    
T  37571219 attagatgttcag 37571231  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 37570710 - 37570761
Alignment:
Q  8 aataatatccctttctcttaaaatgcaacttgagcaacgatcaaataaatac 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37570710 aataatatccctttctcttaaaatgcaacttgagcaacgatcaaataaatac 37570761  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 11862313 - 11862390
Alignment:
Q  301 caatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaa 379  Q
    ||||| |||||||| |||| ||||||| |||||||  |||| |||||||||| ||||||| |||  |||||||||||||    
T  11862313 caattcaatcctaactttacagataaatatttcatcaacaaaattataaatc-aagtaatcgatcaattttgtttcaaa 11862390  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 4187381 - 4187465
Alignment:
Q  302 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagacc 387  Q
    ||||||||||||| |||||||||||| |||||||  ||||| ||||||||| |||||||  ||  |||||||||||||||||||||    
T  4187381 aatttaatcctaaatttatagataaatatttcatcaacaacgttataaatc-aagtaatcaatcaattttgtttcaaattaagacc 4187465  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 28452042 - 28452094
Alignment:
Q  302 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 354  Q
    |||| ||||||||||||| ||||||| |||||||| |||| ||||||||||||    
T  28452042 aattcaatcctaattttaaagataaatatttcattaacaatattataaatcaa 28452094  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 4408301 - 4408390
Alignment:
Q  295 gtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaaga 385  Q
    ||||| ||||| |||| ||||||||| |||||| |||||||| |||| ||||||||||||| ||||||||| ||||| ||| ||| |||||    
T  4408301 gtttcccaattcaatcttaattttattgataaatatttcattaacaaaattataaatcaaa-taattgattaattttattttaaactaaga 4408390  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 4080463 - 4080379
Alignment:
Q  302 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagacc 387  Q
    ||||||| | |||||||| ||||||| |||||||| |||| |||| ||||||| ||||| |||  |||||||||||||||||||||    
T  4080463 aatttaagcataattttacagataaatatttcattaacaatattacaaatcaa-gtaatcgatcaattttgtttcaaattaagacc 4080379  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 47763229 - 47763150
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgatttt 371  Q
    ||||||||| | ||| ||||||||||||| |||||||||||||||   |||||||||||||| ||||| ||||| ||||||    
T  47763229 tattgtttctcgattcaatcctaattttacagataaacatttcatcagcaacattataaatc-aagtatttgatcgatttt 47763150  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 23532881 - 23532837
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcat 335  Q
    ||||||||  |||||||||| |||||||||||||||| |||||||    
T  23532881 tattgtttttcaatttaatcttaattttatagataaatatttcat 23532837  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 32893825 - 32893738
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaa 379  Q
    ||||||||| ||||| |||| |||||||| ||||||| ||||||   |||||||||||| || ||||||| |||  ||||| |||||||    
T  32893825 tattgtttcccaattcaatcttaattttacagataaatatttcaacaacaacattataattc-aagtaatagatcaattttatttcaaa 32893738  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 20500415 - 20500479
Alignment:
Q  316 tttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaatt 381  Q
    |||||||||||| ||| |||  |||| |||||||||||| ||||||||||||||||||||||||||    
T  20500415 tttatagataaatattccataaacaatattataaatcaa-gtaattgattgattttgtttcaaatt 20500479  T

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Target: scaffold0100 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 39277 - 39230
Alignment:
Q  338 acaacattataaatcaaagtaattgattgattttgtttcaaattaagac 386  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39277 acaacattataaatcaa-gtaattgattgatttcgtttcaaattaagac 39230  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 3371505 - 3371436
Alignment:
Q  309 tcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaa 379  Q
    ||||||||||||||||||| |||||||  |||||| |||||||| || |||||||| ||| ||||||||||    
T  3371505 tcctaattttatagataaatatttcatcaacaacaatataaatc-aattaattgatcgatattgtttcaaa 3371436  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 26635987 - 26635915
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgat 364  Q
    ||||||||||||||| |||| |||||||| ||||||| |||| ||  ||||||||||| ||| |||||||||||    
T  26635987 tattgtttcacaattcaatcataattttacagataaatattttatcaacaacattatagatc-aagtaattgat 26635915  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 56094352 - 56094300
Alignment:
Q  302 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 354  Q
    ||||||| |||||||||| ||||||| |||| ||  |||||||||||||||||    
T  56094352 aatttaagcctaattttacagataaatatttgatcaacaacattataaatcaa 56094300  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 34367263 - 34367200
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 354  Q
    ||||||||  ||||| ||||||||||||| ||||||| |||||||  |||||||| ||||||||    
T  34367263 tattgtttgccaattcaatcctaattttagagataaatatttcatcaacaacattttaaatcaa 34367200  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 15089193 - 15089248
Alignment:
Q  293 ttgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaat 351  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||   |||||||||||||    
T  15089193 ttgtttctcaattcaatcctaattttacagataaatatttcat---caacattataaat 15089248  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 29491080 - 29491016
Alignment:
Q  291 tattgtttcacaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaa 355  Q
    ||||||||  ||||| |||| |||||||| ||||||| |||||||  |||| |||||||||||||    
T  29491080 tattgtttttcaattcaatcttaattttacagataaatatttcatcgacaatattataaatcaaa 29491016  T

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