View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-14 (Length: 701)
Name: NF1422-Insertion-14
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 9 - 701
Target Start/End: Complemental strand, 3702230 - 3701533
Alignment:
| Q |
9 |
aatcaagggtttgaaacgaataacttcgatctacttcttgggtagggaaactatgtataaaaatataatatttctcttcttcttgagaagcttccatgtt |
108 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
3702230 |
aatccagggtttgaaacgaataactttgatctacttcttgggtagggaaactatgtataaaaatagaatacttctcttcttcttgagaagcttccatgtt |
3702131 |
T |
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| Q |
109 |
ttttggattggttgtacttcatgtctttcaatttatgatatgccttaaaataatatgaagtgttaataccacacttaaatcatgaaataaacaaatagtt |
208 |
Q |
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| T |
3702130 |
ttttggattggttgtacttcatgtctttcaatttatgatatgccttaaaataatatgaagtgttaataccacacttaaatcatgaaataaataaatagtt |
3702031 |
T |
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| Q |
209 |
aaaacttgataccattaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaactt--agagtgtt |
306 |
Q |
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| T |
3702030 |
aaaacttgataccattaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaatttacagagtgtt |
3701931 |
T |
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| Q |
307 |
gaacatcttttgtgattcaccaattttgacatggttactaattaattctcttcaaacatataacaaaacttatttcctagaaacccccattgggagtata |
406 |
Q |
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| T |
3701930 |
gaacatcttttgtgattcaccaattttgacatggttactaattaattctcttcaaacatataacaaaacttatttcctagaaacacctattgggagtata |
3701831 |
T |
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| Q |
407 |
gtacaaatgtgacactaacattcccagcatgtaatraaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaata |
506 |
Q |
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| T |
3701830 |
gtacaaacgtgacactaacattcccagcatgtaataaaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaata |
3701731 |
T |
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| Q |
507 |
gatatagcaagtagcagttgcgtgacgaactaa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagaca-ctaaac |
604 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
3701730 |
gatatagcaagtagcagttgcgtgaccaactaactcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacaccaaaac |
3701631 |
T |
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| Q |
605 |
tttcacacgatttcta-ttgacaaatatatattccctctattcctttcctctttgcatagc-tacccaataaaacgacgagaattgaaatttccattta |
701 |
Q |
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| T |
3701630 |
tttcaca-gatttctatttgacaaatacatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttccattta |
3701533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 501 - 701
Target Start/End: Complemental strand, 3708504 - 3708300
Alignment:
| Q |
501 |
aaaatagatatagcaagtagcagttgcgtgacgaactaa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagaca- |
598 |
Q |
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| T |
3708504 |
aaaatagatatagcaagtagcagttgtgtggcgaacaaactcgagtttaatagatcaagtattaaattattcaatgcaattatgcaaacattatagacac |
3708405 |
T |
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| Q |
599 |
ctaaactttcacacgatttctatt-gacaaatatatattccctctattcctttcctctttgcatagc-tacccaataaaacgacgagaattgaaatttcc |
696 |
Q |
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| T |
3708404 |
caaaactctcacatgatttctattcgacaaatacatattccctcgattcttttcttctttgcacagctttccctataaaacgttgataattgaaatttcc |
3708305 |
T |
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| Q |
697 |
attta |
701 |
Q |
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| T |
3708304 |
attta |
3708300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 201 - 338
Target Start/End: Complemental strand, 3720340 - 3720201
Alignment:
| Q |
201 |
aaatagttaaaacttgataccattaaaagttatagcgcttggtcctttgagggacaatagtcttccaagggacaaacaaattgttaccatgaaaactt-- |
298 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||| | |
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| T |
3720340 |
aaatagtaaaaacttgataccattaaaagttataattcttggtcctctgagggacaacagtcttccaaggggc-aacaaattgttaccaagaaaaggtta |
3720242 |
T |
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| Q |
299 |
-agagtgttgaacatcttttgtgattcaccaattttgacat |
338 |
Q |
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| T |
3720241 |
catagtcttgaacatcttttgtgattcaaaatttttgacat |
3720201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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