View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-15 (Length: 560)

Name: NF1422-Insertion-15
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-15
NF1422-Insertion-15
[»] chr3 (1 HSPs)
chr3 (8-560)||(55067351-55067887)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 55067887 - 55067351
Alignment:
Q  8 ataacgtcttgcaatttgccgttcttccagaagcttccttaggtgctgatttatatctctcttccgtaaccactatcaccgacgttgaaatcaccgctga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55067887 ataacgtcttgcaatttgccgttcttccagaagcttccttaggtgctgatttatatctctcttccgtaaccactattaccgacgttgaaatcaccgctga 55067788  T
Q  108 tttacaggttcgttcatacacactctcttcttttttcctatttagtgaaatctagaatacattcaagttattattattatcatattaaattcatagacct 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||  |    ||            | |||||||||   |||||||||||||||||||||    
T  55067787 tttacaggttcgttcatacatactctcttcttttttcctatttaccg----ct-----------gatttattatta---tcatattaaattcatagacct 55067706  T
Q  208 gaatttaattgccacattgccttttcatttttctcatctaaccttattaattttgtttcataacataaatg---tgatgtatgtaatactgcgtctaggt 304  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||    
T  55067705 gaatttaattgccacattgccttttcatttttctcatctaatcttattaattttgtttcataacataactgtgatgatgtatgtaatactgcgtctaggt 55067606  T
Q  305 ggctagggtgtatgtatctgtttttggagatgaaagagggaaggaagtggccatagctgggttgaaatcaaaagccaaatatgttcgcggtgagttgggg 404  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  55067605 ggctagggtttatgtatctgtttttggagatgaaagagggaaggaagtggccatggctgggttgaaatcaaaagccaaatatgttcgcggtgagttaggg 55067506  T
Q  405 aggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccgttcttc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55067505 aggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccgttcttc 55067406  T
Q  505 tatgttttgcaattgtaagtttgtgctgttctgtttccactttgggccctttcctg 560  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55067405 tatgttttgcaattgtaagtttgtgctgttctgtttccacttt-ggccctttcctg 55067351  T

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