View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-18 (Length: 668)
Name: NF1422-Insertion-18
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 352 - 668
Target Start/End: Complemental strand, 21056304 - 21055988
Alignment:
| Q |
352 |
accagggtgtggaaacaagaaccgaaatcatgtaaagctacgaagacatggtctgatcctgtgctacggttccagaaagggtactcggtggagatgagtt |
451 |
Q |
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| T |
21056304 |
accagggtgtggaaacaagaaccgaaatcatgtgaagctacgaagacatggtctgatcctgtgctacggttccagaaagggtactcggtggagatgagtt |
21056205 |
T |
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| Q |
452 |
tcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatc |
551 |
Q |
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| T |
21056204 |
tcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatc |
21056105 |
T |
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| Q |
552 |
agcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagttttgcatcttgggttttta |
651 |
Q |
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| T |
21056104 |
agcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagttttgcatcttgggttttta |
21056005 |
T |
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| Q |
652 |
agccagtttttgttgta |
668 |
Q |
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| T |
21056004 |
agccagtttttgttgta |
21055988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 21056658 - 21056399
Alignment:
| Q |
8 |
attacttgctgtaaaaccttccactaacgttcttaggatgaacctccattttcccacgaaagaaaacccaaatatctcgccgtccgttcatcggaaaatt |
107 |
Q |
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| T |
21056658 |
attacttgctgtaaaaccttccactaacgttcttaggatgaacctccattttcccacgaaagaaaacccaaatatctcgccgtccgttcaccggaaaatt |
21056559 |
T |
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| Q |
108 |
ctccaacgtattccgtacactttccggcgaaacaaacggtggtatcacaacatgttcaactttctgacaaggatgatcataagtaacaccaaaagtttgt |
207 |
Q |
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| T |
21056558 |
ctccaacgtattccgtacactttccggcgaaacaaacggtggtatcacaacatgttcaactttctgacaaggatgatcataagtaacaccaaaagtttgt |
21056459 |
T |
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| Q |
208 |
aacacaattgaattcttcataatttcaggtaccccatctttcattgccacgtcctccttc |
267 |
Q |
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| T |
21056458 |
aacacaattgaattcttcataatttcaggtaccccatctttcattgccacgtcctccttc |
21056399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 436 - 654
Target Start/End: Original strand, 12172761 - 12172979
Alignment:
| Q |
436 |
tcggtggagatgagtttcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactg |
535 |
Q |
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| T |
12172761 |
tcggtggagatgagattaactactgaagaaatcaacgaacgtgcatgaccaattgcagggaagccattaacagtgctgaagttacaagaaacataaattg |
12172860 |
T |
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| Q |
536 |
gtacaaagaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
635 |
Q |
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| T |
12172861 |
ctacaaagaaaaaatcagcttcgtaagggtcaaaagttctaacatcacttgttaataaagctctatgaatttcaacttttgaagcaaataaacgagtttt |
12172960 |
T |
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| Q |
636 |
gcatcttgggtttttaagc |
654 |
Q |
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| T |
12172961 |
gcatcttgagtttgtaagc |
12172979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 376 - 635
Target Start/End: Original strand, 35417031 - 35417290
Alignment:
| Q |
376 |
aaatcatgtaaagctacgaagacatggtctgatcctgtgctacggttccagaaagggtactcggtggagatgagtttcactgctgaagaaatcaatgaac |
475 |
Q |
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| T |
35417031 |
aaatcatgagaagcgacaaaaacatggtcggatcctctgcttcgattccaaaatggatattcggtggagacgagctcaaccgcggaggaaatgagagcac |
35417130 |
T |
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| Q |
476 |
gtgcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatcagcttcatatgggtcaaaagttct |
575 |
Q |
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| T |
35417131 |
gggcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaagaagaaatcagcttcataagggtcaaaagttct |
35417230 |
T |
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| Q |
576 |
tacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
635 |
Q |
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| T |
35417231 |
cacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgtttt |
35417290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 35416530 - 35416623
Alignment:
| Q |
9 |
ttacttgctgtaaaaccttccactaacgttcttaggatgaacctccattttcccacgaaagaaaacccaaatatctcgccgtccgttcatcgga |
102 |
Q |
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||||||||||||| ||| |||||| ||||| ||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
35416530 |
ttacttgctgtaataccgtccactgacgtttttaggatgaacttccattttccctctaaagaaagcccaaatatctcgccgtccgttcatcgga |
35416623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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