View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-19 (Length: 496)
Name: NF1422-Insertion-19
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 154 - 496
Target Start/End: Complemental strand, 52811067 - 52810725
Alignment:
| Q |
154 |
gaatagggattggcactgtcctgtttgtcatcatggcgttttttgatcaacccaagtggatgtggtaatggccatattccttgtaagccatcatcaattg |
253 |
Q |
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| T |
52811067 |
gaatagggattggcactgtcatgtttgtcatcatggcgttttttgatcaacccaagtggatgtggtaatggccatattccttgtaagccatcatcaattg |
52810968 |
T |
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| Q |
254 |
gagttagcattttctacttttctatatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatgagag |
353 |
Q |
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| T |
52810967 |
gagttagcattttctacttttctatatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatgagag |
52810868 |
T |
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| Q |
354 |
gaatccaaaagagaggagtttaaaagtagctttcttctgttatttttacttttccctcaacgttggatctttgttctccaatactgtattggtctattat |
453 |
Q |
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| T |
52810867 |
gaatccaaaagagaggagtttaaaagtagctttcttctgttatttttacttttccctcaacgttggatctttgttctccaatactgtattggtctattat |
52810768 |
T |
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| Q |
454 |
gaggacacagggaagtggacaatgggtttctttatatcattga |
496 |
Q |
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| T |
52810767 |
gaggacacggggaagtggacaatgggtttctttatatcattga |
52810725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 52811228 - 52811148
Alignment:
| Q |
8 |
catttctcagtgactcttattggggtcgatacttaacctgcacaatctttcaacttttctttgttctcgtatgtataacta |
88 |
Q |
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| T |
52811228 |
catttctcagtgactcttattggggtcgatacttaacctgcacaatctttcaacttttctttgttctcgtatgtataacta |
52811148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9749674 - 9749617
Alignment:
| Q |
27 |
ttggggtcgatacttaacctgcacaatctttcaacttttctttgttctcgtatgtata |
84 |
Q |
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| T |
9749674 |
ttggggtcgatacttagcctgcacaatctttcaacttttctttgttcttgtatgtata |
9749617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 9749538 - 9749503
Alignment:
| Q |
155 |
aatagggattggcactgtcctgtttgtcatcatggc |
190 |
Q |
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| T |
9749538 |
aatagggattggcactgttctgtttgtcatcatggc |
9749503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 3804077 - 3804004
Alignment:
| Q |
277 |
atatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatga |
350 |
Q |
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| T |
3804077 |
atatatatggttgcatttggatatggagggcatcaacctaccttagcaacctttggagctgatcaatttgatga |
3804004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 396577 - 396650
Alignment:
| Q |
277 |
atatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatga |
350 |
Q |
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| T |
396577 |
atatatttggttgcatttggatatggagggcatcaacctaccttagcaacatttggagctgatcaatttgatga |
396650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3804597 - 3804533
Alignment:
| Q |
16 |
agtgactcttattggggtcgatacttaacctgcacaatctttcaacttttctttgttctcgtatg |
80 |
Q |
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| T |
3804597 |
agtgattcttattggggaagatacttaacttgcactatctttcagcttttttttgttctggtatg |
3804533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 396113 - 396177
Alignment:
| Q |
16 |
agtgactcttattggggtcgatacttaacctgcacaatctttcaacttttctttgttctcgtatg |
80 |
Q |
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| T |
396113 |
agtgattcttattggggaagatacttaacatgcgctatctttcagctcttctttgttctggtatg |
396177 |
T |
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