View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422-Insertion-2 (Length: 755)

Name: NF1422-Insertion-2
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422-Insertion-2
NF1422-Insertion-2
[»] chr4 (1 HSPs)
chr4 (6-752)||(54349981-54350730)


Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 6 - 752
Target Start/End: Complemental strand, 54350730 - 54349981
Alignment:
Q  6 caaaaacaaagtgtttttcgaaaacgacggtttgtcttacacctaaagatcacaacatataacatcctaattattttattgaatgggtgaaggccgtaaa 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350730 caaaaacaaagtgtttttcgaaaacgacagtttgtcttacacctaaagatcacaacatataacatcctaattattttattgaatgggtgaaggccgtaaa 54350631  T
Q  106 ggggacactcgttgctcagatacaatgtttagcataagttgtattcgacaaaaacagtattgtattactagaacgttggcacatgcgaccttgtgttgtg 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350630 ggggacactcgttgctcagatacaatgtttaacataagttgtattcgacaaaaacagtattgtattactagaacgttggcacatgcgaccttgtgttgtg 54350531  T
Q  206 gtttttctgtgagatggtcaccaccaccacatgcactaacgccgacaagtcatgtcacgtatctctcgtttcagctcatatttttgttctttacaccgac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350530 gtttttctgtgagatggtcaccaccaccacatgcactaacgccgacaagtcatgtcacgtatctctcgtttcagctcatatttttgttctttacaccgac 54350431  T
Q  306 tgtttcatacatat--acttgggtttagtctcac--agagttattattattgtgaacaaattccattacatctctttgactgctagtaaattaacgagca 401  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54350430 tgtttcatacatatacacttgggtttagtctcacaaagagttattattattgtgaacaaattccattacatctctttgactgctagtaaattaacgaaca 54350331  T
Q  402 aataaagatgcaaaattgaccagacaaatttcaattgttattcagtagtatatttgttttttaaaaatctcgtatacctacctcatttattacctaaata 501  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350330 aataaaaatgcaaaattgaccagacaaatttcaattgttattcagtagtatatttgttttttaaaaatctcgtatacctacctcatttattacctaaata 54350231  T
Q  502 ttatacttgttttggactaggc-aaaaccgagtccaccataaattagggtccaattactcaaattcccaacaagcaaagccaacccttagtattgaatcc 600  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350230 ttatacctgttttggactaggcgaaaaccgagtccaccataaattagggtccaattactcaaattcccaacaagcaaagccaacccttagtattgaatcc 54350131  T
Q  601 tctcctaccaataatagtctataactgctaccaatgg-tggtaacgctcattcaatctcagtcataatgggacacctttcatcacggccgccccatgact 699  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54350130 tctcctaccaataatagtctataactgctaccaatggttggtaacgctcattcaatctcagtcataat-ggacacctttcatcacggccgccccatgact 54350032  T
Q  700 aaacaacggtctcctcgaccctatctaaagaagctcttgaacaagctcataat 752  Q
    | ||||||||||||||||| |||| ||||| |||| ||| |||||||||||||    
T  54350031 atacaacggtctcctcgactctatataaag-agctgttg-acaagctcataat 54349981  T

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