View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-20 (Length: 659)
Name: NF1422-Insertion-20
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-20 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 561
Target Start/End: Complemental strand, 44764106 - 44763557
Alignment:
| Q |
7 |
aaaattagcacaatgttaccacaccatagcttatccgggaaagacaacaattcttcacaaatactattatttccacacatcaaagattgaaaaggagcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764106 |
aaaattagcacaatgttaccacaccatagcttatccgggaaagacaacaattcttcacaaatactattatttccacacatcaaagattgaaaaggagcaa |
44764007 |
T |
|
| Q |
107 |
gtgagtgacttttacaggaaaactcaacaaaacttttagagattcccccataagtaatcaaagcaaaataagttctcttgggaattccaaaccaaactgt |
206 |
Q |
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| T |
44764006 |
gtgagtgacttttacaggaaaactcaacaaaacttttagagattctcccataagtaatcaaagcaaaataagttctcttgggaattccaaaccaaactgt |
44763907 |
T |
|
| Q |
207 |
aatcatccagcaaggaaaagcaatggaaaatttggattcattgtgaatcaatccccatttaaattttagaacccaacaattaagaacatataaaaatgtg |
306 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44763906 |
aatcatccagcaaggaaaagcaatggaaaatttggcttcgttgtgaatcaatccccatttaaattttagaacccaacaattaagaacatataaaaatgtg |
44763807 |
T |
|
| Q |
307 |
gcagtaattgggttaaaaaccaaggagaatagcatactctgattctggaagtgataaaacacattgtgaaatattgcatagtcgaatagttcaacaagta |
406 |
Q |
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| T |
44763806 |
gcagtaattgggttaaaaaccaaggagaataacatactctgattctggaagtgataaaacacattgtgaaatattgcatagtcgaat-----aacaagta |
44763712 |
T |
|
| Q |
407 |
gatagatgcagtactcatagtcctcatgaataatggtcacaatcttcacttttagcacactcaaactcacgcttgcatttaagggttgggaaaaacctca |
506 |
Q |
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| T |
44763711 |
gatagatgcagtactcataatcctcatgaataatggtcacaatcttcac-tttagcacactcaaactcacgcttgcatttaaaggtt-ggaaaaacctca |
44763614 |
T |
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| Q |
507 |
-gataattgtcacaccaaactactgatcgtgtctctaaacctttgt-aatcttccac |
561 |
Q |
| |
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| T |
44763613 |
ggataattgtcacaccaaactactgatcgtgtctctaaacctttgtaaatcttccac |
44763557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 342 - 553
Target Start/End: Complemental strand, 23407847 - 23407636
Alignment:
| Q |
342 |
actctgattctg-gaagtgataaaacacattgtgaaatattgcatagtcgaatagttcaacaagtagatagatgcagtactcatagtcctcatgaataat |
440 |
Q |
| |
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| T |
23407847 |
actctgattcttagaagtggtaaaacacattgtgaaacattgcatagggaaatagctcaataagtagataggtgaagtactcataatcctcattaataat |
23407748 |
T |
|
| Q |
441 |
ggtcacaatcttcacttttagcacactcaaactcacgcttgcatttaagggttgggaaaaacctca-gataattgtcacaccaaactactgatcgtgtct |
539 |
Q |
| |
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||||||||||||||| | |||||||||| |||||| ||||||||||| |||| |||||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
23407747 |
ggtcacaatcttcac-tctagcacactcgaactcaagcttgcatttataggtt-ggaaaaacctcatgataattgtcacaccaaatgactgattgtgtct |
23407650 |
T |
|
| Q |
540 |
ctaaacctttgtaa |
553 |
Q |
| |
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|||||||||||||| |
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| T |
23407649 |
ctaaacctttgtaa |
23407636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 23407985 - 23407850
Alignment:
| Q |
63 |
acaaatactattatttccacacatcaaagattgaaaaggagcaagtgagtgacttttacaggaaaactcaacaaaacttttagagattcccccataagta |
162 |
Q |
| |
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|||||| |||||||||| | |||||||||||||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||| |||||||||| |
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| T |
23407985 |
acaaatgctattatttctaaacatcaaagattgaaaaggagcaagtgagtaaattttattggaaaactcattaaattttttagagattgtcccataagta |
23407886 |
T |
|
| Q |
163 |
atcaaagcaaaataagttctcttgggaattccaaac |
198 |
Q |
| |
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| T |
23407885 |
atcaaagcaaaataagttctcttgggaatcccaaac |
23407850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 366859 - 366940
Alignment:
| Q |
471 |
actcacgcttgcatttaagggttgggaaaaacctca-gataattgtcacaccaaactactgatcgtgtctctaaacctttgta |
552 |
Q |
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||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
366859 |
actcaagcttgcatttacaggttgg-aaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttgta |
366940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 1634392 - 1634423
Alignment:
| Q |
7 |
aaaattagcacaatgttaccacaccatagctt |
38 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1634392 |
aaaattagcacaatgttaccacaccatagctt |
1634423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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