View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1422-Insertion-21 (Length: 690)
Name: NF1422-Insertion-21
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-21 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Original strand, 2389000 - 2389683
Alignment:
| Q |
8 |
agaacggctaccatactgctagaatcgagataaactcgatccacctgacataaataagaagacattagcatgttggtaaaatttcaaggattgccgatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389000 |
agaacggctaccatactgctagaatcgagataaactcgatccacctaacacaaataagaagacattagcatgttggtaaaatttcaaggattgccgatta |
2389099 |
T |
|
| Q |
108 |
atttaacttataaatataaggatgggcttggattaaaatcatcaactgcctcacctcagattcaaatgttaaagcatctccttgttcggtgaagcgttcc |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2389100 |
atttaacttacaaatataaggatgggcttggattaaaatcatcaactgcctcacctcagattcaaatgttaaagcatctccttgttcagtgaagcgttcc |
2389199 |
T |
|
| Q |
208 |
ttctggtgtaggttatccagatagtcaagagtttccaacccttctaccctcacttcgctgtcattaatcggaaaaatttaaggttaagttaaaaacttat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389200 |
ttctggtgtaggttatccagatagtcaagagtttccaacccttctaccctcacttcgctgtcaataatcggaaaaatttaaggttaagttaaaaacttat |
2389299 |
T |
|
| Q |
308 |
atgcgaattcaaagttttgcaactttataaaatttaaaaataaacaaaaggacttgtgaaaagaaattaatatttcagaacagattgattccttgataaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389300 |
atgcgaattcaaagttttgcaactttataaaatttaaaaataaacaaaaggactcgtgaaaagaaattaatatttcagaacagattgattccttgataaa |
2389399 |
T |
|
| Q |
408 |
ataatcgatcttgatcttatcttgaaagtgttggaatagcatacagacctgatatcagatatggagaaatatgtatgaaatgcaagggagaaactgaaag |
507 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2389400 |
ataattgatcttgatcttatcttgaaagtgttggaatagcatacagacctgatatcggatatcgagaaatatgtatgaaatgcaaaggagaaactgaaag |
2389499 |
T |
|
| Q |
508 |
gcttgccattgacattccggatgcgagatatcatattcagacggccatctgctgccaaacagaccctta-gcgaaactcgaagctgaataaaataattta |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2389500 |
gcttgccattgacattccggatgcgagatatcatattcagacggccatctgctgccaaacagacccttaggcgaaactcgaagctgaataaaataattta |
2389599 |
T |
|
| Q |
607 |
gtacat-aaacattgtaatccaacaatctcaatcctcaagatacatgaaatatacatgtttactgtataggaactggggtatcta |
690 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2389600 |
gtacataaaacattgtcatccaacaatctcaattctcaagatacatgaaatatacatg-ttactgtataggaactggggtatcta |
2389683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University