View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-22 (Length: 765)
Name: NF1422-Insertion-22
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-22 |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 33 - 762
Target Start/End: Original strand, 31755384 - 31756130
Alignment:
| Q |
33 |
aaacatatatattgaataataatgatagaattgaattcataaaatatagacctgttttttccaattcgtaagagatgtaatgatggaaagaaaaattgtt |
132 |
Q |
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| T |
31755384 |
aaacatgtatattgaataataatgatagaattgaattcataaaatatagacctgttttttccaattcgtaagagatgtaatgatggagagaaaaattgtt |
31755483 |
T |
|
| Q |
133 |
tggacaatggagccagcaactattccaatccaaaggccctttgctttgaaatgtgcaatgaaacccagcactacacctataggaattcctactagacaaa |
232 |
Q |
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| T |
31755484 |
tggacaatggagccagcaactattccaatccaaaggccctttgctttgaaatgtgcaatgaaacccagtactacacctataggaattcctactagataaa |
31755583 |
T |
|
| Q |
233 |
aggctccaagattaacataggctccaacatattgccacccacttcctctagcaacccctgaatatt-aaagaaatagatttatcatacatctttgaaaac |
331 |
Q |
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| T |
31755584 |
aggctccaagattaacataggctccaacatattgccacccacttcctctagcaacccctgaatattaaaagaaatagatttatcatacatctttgaaaac |
31755683 |
T |
|
| Q |
332 |
accttaacaaattatttgactaaagtggttaatgagatcc----------------tcattagggaggtttcaagtctgattcctgatgagaacaatttc |
415 |
Q |
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| T |
31755684 |
accttaacaaatgatttgactaaagtggttaatgagatcctcctagctaggaagaatcattagggaggtttcaagttcgattcctgataagaacaatttc |
31755783 |
T |
|
| Q |
416 |
taatcaaactttacttaccttccgatcaaactcta-attattaacgccaaaaaagtacatctttgaattttgaaacatctagagccaaacttgggcacat |
514 |
Q |
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| T |
31755784 |
taatcagactttacttaccttccaatcgaactctagattattaacgtcaaaaaagtacatctttgaattttg--------agagccaaacttgggcacat |
31755875 |
T |
|
| Q |
515 |
gcctcaatagggaatatcttatggatgtaactcttcaacatgtaaataatagcaaaatagtgaaaggaagtgatgttaacctg-aagaactgcttgcaag |
613 |
Q |
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| T |
31755876 |
gcctcaatagggaatatcttatggatgtaactcttcaacatgtaaataatagcaaaatagtgaaaggaagagatgttaacctgaaagaactgcttgcaag |
31755975 |
T |
|
| Q |
614 |
ctgtcagt-aaaattgatacacatagcaaa-gtgtcataacagccacataatgaacaaccatactatcattggtat-agcataacc--aaacacatctac |
708 |
Q |
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| T |
31755976 |
ctgtcagtaaaaattgatacacatagcaaaggtgtcataacagccacataatgaacaaccatactatcattggtataagcataacccaaaacacatctac |
31756075 |
T |
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| Q |
709 |
aacctaataagattgcagttataataagagcctctgtag-tgcaaggaacattgc |
762 |
Q |
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| T |
31756076 |
aacctaataagattgcagttataataagagcctctgtagttgcaaggaacattgc |
31756130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 49191363 - 49191294
Alignment:
| Q |
232 |
aaggctccaagattaacataggctccaacatattgccacccacttcctctagcaacccctgaatattaaa |
301 |
Q |
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|||||||| ||||| ||||| |||| | || ||||||||||| |||||||||||||||||||| |||| |
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| T |
49191363 |
aaggctcctagattgacataaactcctatatgttgccacccacaacctctagcaacccctgaataataaa |
49191294 |
T |
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