View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422-Insertion-24 (Length: 315)
Name: NF1422-Insertion-24
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422-Insertion-24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 42560668 - 42560365
Alignment:
| Q |
10 |
aatgatttatctgatcttatatgtggcatcatcggcccaaaaagtattcctcaataaaatgaaacacattaggacctaaaaagaaaattaaccattttcc |
109 |
Q |
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| T |
42560668 |
aatgatttatctgatcttatatgtggcatca---gcccaaaaagtattcctcaataaaatgaagcacattaggacctaaaaagaaaattaaccattttcc |
42560572 |
T |
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| Q |
110 |
tttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccttccgctcgattaagcaaaaaacctgattaa-ttatcatgt |
208 |
Q |
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| T |
42560571 |
tttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccctcccctcgattaagcaaaaaacctgattaatttatcatgt |
42560472 |
T |
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| Q |
209 |
agatcttgacttacgccataacaattaataaggnnnnnnnggtgttatactctaaccatttgtcataagtgattgattaattgttttgttaaaactcacc |
308 |
Q |
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| T |
42560471 |
agatcttgacttacgccataacaattaataaggaaaaaaaggtgttatactctaaccatttgtcataagtgattgattaattgttttgttaaaactcacc |
42560372 |
T |
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| Q |
309 |
gtgagta |
315 |
Q |
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||||||| |
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| T |
42560371 |
gtgagta |
42560365 |
T |
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